Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_22980 and NOLOHH_22985 are separated by 432 nucleotides NOLOHH_22985 and NOLOHH_22990 are separated by 15 nucleotides NOLOHH_22990 and ral are separated by 240 nucleotides ral and ea10 are separated by 182 nucleotides
NOLOHH_22980: NOLOHH_22980 - hypothetical protein, at 4,527,579 to 4,528,070
_22980
NOLOHH_22985: NOLOHH_22985 - antitermination protein N, at 4,528,503 to 4,528,775
_22985
NOLOHH_22990: NOLOHH_22990 - superinfection exclusion protein B, at 4,528,791 to 4,529,345
_22990
NOLOHH_22995: ral - Restriction inhibitor protein ral, at 4,529,586 to 4,529,786
ral
NOLOHH_23000: ea10 - Protein ea10, at 4,529,969 to 4,530,337
ea10
Position (kb) 4528
4529
4530 Strain fitness (log2 ratio) -1
0
1
2 at 4527.858 kb on + strand, within NOLOHH_22980 at 4527.863 kb on + strand, within NOLOHH_22980 at 4527.880 kb on + strand, within NOLOHH_22980 at 4527.888 kb on + strand, within NOLOHH_22980 at 4527.891 kb on + strand, within NOLOHH_22980 at 4528.044 kb on + strand at 4528.117 kb on - strand at 4528.195 kb on - strand at 4528.387 kb on + strand at 4528.388 kb on - strand at 4528.420 kb on + strand at 4528.420 kb on + strand at 4528.420 kb on + strand at 4528.420 kb on + strand at 4528.420 kb on + strand at 4528.421 kb on - strand at 4528.421 kb on - strand at 4528.421 kb on - strand at 4528.524 kb on - strand at 4528.601 kb on - strand, within NOLOHH_22985 at 4528.732 kb on - strand, within NOLOHH_22985 at 4528.863 kb on - strand, within NOLOHH_22990 at 4528.867 kb on + strand, within NOLOHH_22990 at 4528.867 kb on + strand, within NOLOHH_22990 at 4528.867 kb on + strand, within NOLOHH_22990 at 4528.868 kb on - strand, within NOLOHH_22990 at 4528.870 kb on - strand, within NOLOHH_22990 at 4528.881 kb on - strand, within NOLOHH_22990 at 4528.881 kb on - strand, within NOLOHH_22990 at 4529.032 kb on + strand, within NOLOHH_22990 at 4529.033 kb on - strand, within NOLOHH_22990 at 4529.033 kb on - strand, within NOLOHH_22990 at 4529.033 kb on - strand, within NOLOHH_22990 at 4529.078 kb on - strand, within NOLOHH_22990 at 4529.153 kb on + strand, within NOLOHH_22990 at 4529.177 kb on + strand, within NOLOHH_22990 at 4529.197 kb on + strand, within NOLOHH_22990 at 4529.197 kb on + strand, within NOLOHH_22990 at 4529.198 kb on - strand, within NOLOHH_22990 at 4529.198 kb on - strand, within NOLOHH_22990 at 4529.198 kb on - strand, within NOLOHH_22990 at 4529.201 kb on - strand, within NOLOHH_22990 at 4529.273 kb on + strand, within NOLOHH_22990 at 4529.315 kb on + strand at 4529.465 kb on + strand at 4529.513 kb on + strand at 4529.513 kb on + strand at 4529.514 kb on - strand at 4529.515 kb on + strand at 4529.585 kb on + strand at 4530.121 kb on - strand, within ea10 at 4530.183 kb on + strand, within ea10 at 4530.192 kb on - strand, within ea10
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 4,527,858 + NOLOHH_22980 0.57 -0.5 4,527,863 + NOLOHH_22980 0.58 +1.2 4,527,880 + NOLOHH_22980 0.61 +0.7 4,527,888 + NOLOHH_22980 0.63 +1.1 4,527,891 + NOLOHH_22980 0.63 +1.2 4,528,044 + -0.6 4,528,117 - +0.8 4,528,195 - -0.9 4,528,387 + -1.1 4,528,388 - +0.2 4,528,420 + +0.9 4,528,420 + -0.2 4,528,420 + +0.0 4,528,420 + -1.0 4,528,420 + -0.3 4,528,421 - +0.8 4,528,421 - -0.0 4,528,421 - +0.7 4,528,524 - -0.2 4,528,601 - NOLOHH_22985 0.36 +0.4 4,528,732 - NOLOHH_22985 0.84 +0.7 4,528,863 - NOLOHH_22990 0.13 +0.1 4,528,867 + NOLOHH_22990 0.14 +0.1 4,528,867 + NOLOHH_22990 0.14 +1.0 4,528,867 + NOLOHH_22990 0.14 -0.1 4,528,868 - NOLOHH_22990 0.14 -0.2 4,528,870 - NOLOHH_22990 0.14 +0.4 4,528,881 - NOLOHH_22990 0.16 +0.3 4,528,881 - NOLOHH_22990 0.16 +0.6 4,529,032 + NOLOHH_22990 0.43 +0.9 4,529,033 - NOLOHH_22990 0.44 +1.3 4,529,033 - NOLOHH_22990 0.44 -1.2 4,529,033 - NOLOHH_22990 0.44 +0.2 4,529,078 - NOLOHH_22990 0.52 +0.4 4,529,153 + NOLOHH_22990 0.65 +0.3 4,529,177 + NOLOHH_22990 0.70 +0.8 4,529,197 + NOLOHH_22990 0.73 -1.0 4,529,197 + NOLOHH_22990 0.73 -0.5 4,529,198 - NOLOHH_22990 0.73 +0.2 4,529,198 - NOLOHH_22990 0.73 +2.6 4,529,198 - NOLOHH_22990 0.73 -0.3 4,529,201 - NOLOHH_22990 0.74 +0.3 4,529,273 + NOLOHH_22990 0.87 +0.7 4,529,315 + +0.8 4,529,465 + +0.4 4,529,513 + +0.1 4,529,513 + +0.1 4,529,514 - +0.6 4,529,515 + +0.3 4,529,585 + +0.5 4,530,121 - ea10 NOLOHH_23000 0.41 +1.5 4,530,183 + ea10 NOLOHH_23000 0.58 -0.6 4,530,192 - ea10 NOLOHH_23000 0.60 +0.5
Or see this region's nucleotide sequence