Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16735

Experiment: Xylan from corn core; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core; autoclaved 2.5 mg/ml (C)
4,249,656	-		ABI39_RS16730	0.35	-0.6
4,249,656	-		ABI39_RS16730	0.35	-0.8
4,249,656	-		ABI39_RS16730	0.35	-0.1
4,249,720	+		ABI39_RS16730	0.39	-1.0
4,249,759	-		ABI39_RS16730	0.42	-0.0
4,249,894	-		ABI39_RS16730	0.51	+0.4
4,249,894	-		ABI39_RS16730	0.51	+0.1
4,249,896	-		ABI39_RS16730	0.51	-0.1
4,249,931	+		ABI39_RS16730	0.54	-0.5
4,249,932	-		ABI39_RS16730	0.54	-0.6
4,249,938	-		ABI39_RS16730	0.54	+0.2
4,250,197	+		ABI39_RS16730	0.72	-1.4
4,250,255	-		ABI39_RS16730	0.76	-0.2
4,250,763	-		ABI39_RS16735	0.14	+0.6
4,250,763	-		ABI39_RS16735	0.14	+0.5
4,250,854	+		ABI39_RS16735	0.22	-0.0
4,251,031	-		ABI39_RS16735	0.38	-0.8
4,251,115	-		ABI39_RS16735	0.46	-0.4
4,251,169	-		ABI39_RS16735	0.51	+0.6
4,251,225	-		ABI39_RS16735	0.56	-0.6
4,251,229	+		ABI39_RS16735	0.56	+0.3
4,251,281	+		ABI39_RS16735	0.61	-0.2
4,251,374	+		ABI39_RS16735	0.69	-0.3
4,251,408	+		ABI39_RS16735	0.72	+0.3
4,251,426	+		ABI39_RS16735	0.74	-0.4
4,251,454	+		ABI39_RS16735	0.76	-0.2
4,251,455	-		ABI39_RS16735	0.76	-0.2
4,251,471	-		ABI39_RS16735	0.78	+0.1
4,251,485	-		ABI39_RS16735	0.79	-0.5
4,251,528	+		ABI39_RS16735	0.83	+0.1
4,251,528	+		ABI39_RS16735	0.83	-0.3
4,251,529	-		ABI39_RS16735	0.83	-0.1
4,251,529	-		ABI39_RS16735	0.83	+0.2
4,251,630	+				+0.6
4,251,647	+				-0.2
4,251,661	+				-1.3
4,251,693	+				+0.3
4,251,699	+				-0.6
4,251,704	+				+0.2
4,251,752	-				+0.2
4,251,832	+				+0.2
4,251,855	+		ABI39_RS16740	0.11	-0.2
4,251,860	+		ABI39_RS16740	0.12	+0.4
4,251,872	+		ABI39_RS16740	0.13	-0.3
4,251,874	+		ABI39_RS16740	0.13	+1.0
4,251,956	+		ABI39_RS16740	0.20	-0.9
4,251,967	-		ABI39_RS16740	0.21	-0.2
4,252,071	-		ABI39_RS16740	0.29	-0.3
4,252,071	-		ABI39_RS16740	0.29	+0.5
4,252,103	-		ABI39_RS16740	0.32	-0.3
4,252,103	-		ABI39_RS16740	0.32	+0.1
4,252,150	+		ABI39_RS16740	0.36	+0.1
4,252,385	+		ABI39_RS16740	0.55	-0.6
4,252,401	-		ABI39_RS16740	0.57	-0.7
4,252,412	+		ABI39_RS16740	0.57	+0.2
4,252,491	-		ABI39_RS16740	0.64	-0.3
4,252,495	-		ABI39_RS16740	0.64	+0.5
4,252,500	-		ABI39_RS16740	0.65	+0.7
4,252,533	+		ABI39_RS16740	0.67	-0.7
4,252,535	+		ABI39_RS16740	0.68	-0.5
4,252,535	+		ABI39_RS16740	0.68	+0.4
4,252,535	+		ABI39_RS16740	0.68	+0.4
4,252,536	-		ABI39_RS16740	0.68	-0.6
4,252,537	+		ABI39_RS16740	0.68	-1.2
4,252,657	+		ABI39_RS16740	0.78	-1.1
4,252,657	+		ABI39_RS16740	0.78	-0.6
4,252,673	+		ABI39_RS16740	0.79	-0.6
4,252,673	+		ABI39_RS16740	0.79	-0.5