Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22280

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_22270 and artP are separated by 217 nucleotidesartP and artI are separated by 17 nucleotidesartI and artQ are separated by 6 nucleotidesartQ and artM overlap by 1 nucleotides NOLOHH_22270: NOLOHH_22270 - lipoprotein, at 4,398,620 to 4,399,135 _22270 NOLOHH_22275: artP - arginine ABC transporter ATP-binding protein ArtP, at 4,399,353 to 4,400,081 artP NOLOHH_22280: artI - Putative ABC transporter arginine-binding protein 2, at 4,400,099 to 4,400,830 artI NOLOHH_22285: artQ - arginine ABC transporter permease ArtQ, at 4,400,837 to 4,401,553 artQ NOLOHH_22290: artM - arginine ABC transporter permease ArtM, at 4,401,553 to 4,402,221 artM Position (kb) 4400 4401Strain fitness (log2 ratio) -2 -1 0 1at 4399.233 kb on - strandat 4399.245 kb on + strandat 4399.280 kb on - strandat 4399.322 kb on + strandat 4399.323 kb on - strandat 4399.323 kb on - strandat 4399.326 kb on + strandat 4399.342 kb on + strandat 4399.359 kb on - strandat 4399.377 kb on - strandat 4399.450 kb on + strand, within artPat 4399.623 kb on + strand, within artPat 4399.837 kb on + strand, within artPat 4399.968 kb on - strand, within artPat 4399.989 kb on + strand, within artPat 4399.989 kb on + strand, within artPat 4399.989 kb on + strand, within artPat 4399.990 kb on - strand, within artPat 4400.124 kb on + strandat 4400.137 kb on + strandat 4400.284 kb on + strand, within artIat 4400.293 kb on + strand, within artIat 4400.411 kb on + strand, within artIat 4400.411 kb on + strand, within artIat 4400.450 kb on + strand, within artIat 4400.450 kb on + strand, within artIat 4400.450 kb on + strand, within artIat 4400.565 kb on - strand, within artIat 4400.696 kb on + strand, within artIat 4400.696 kb on + strand, within artIat 4400.795 kb on + strandat 4400.828 kb on + strandat 4400.828 kb on + strandat 4400.829 kb on - strandat 4401.035 kb on + strand, within artQat 4401.179 kb on + strand, within artQat 4401.397 kb on - strand, within artQat 4401.703 kb on + strand, within artMat 4401.703 kb on + strand, within artMat 4401.703 kb on + strand, within artMat 4401.705 kb on + strand, within artMat 4401.705 kb on + strand, within artMat 4401.827 kb on + strand, within artMat 4401.827 kb on + strand, within artM

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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4,399,233 - -1.5
4,399,245 + -0.4
4,399,280 - -0.2
4,399,322 + +0.1
4,399,323 - -0.2
4,399,323 - -1.8
4,399,326 + -0.2
4,399,342 + +0.6
4,399,359 - -0.4
4,399,377 - +1.1
4,399,450 + artP NOLOHH_22275 0.13 -0.5
4,399,623 + artP NOLOHH_22275 0.37 -1.9
4,399,837 + artP NOLOHH_22275 0.66 -1.7
4,399,968 - artP NOLOHH_22275 0.84 -0.0
4,399,989 + artP NOLOHH_22275 0.87 -0.5
4,399,989 + artP NOLOHH_22275 0.87 +1.0
4,399,989 + artP NOLOHH_22275 0.87 -0.1
4,399,990 - artP NOLOHH_22275 0.87 +0.9
4,400,124 + +0.6
4,400,137 + +0.6
4,400,284 + artI NOLOHH_22280 0.25 +0.8
4,400,293 + artI NOLOHH_22280 0.27 +0.9
4,400,411 + artI NOLOHH_22280 0.43 -0.3
4,400,411 + artI NOLOHH_22280 0.43 +0.1
4,400,450 + artI NOLOHH_22280 0.48 +0.8
4,400,450 + artI NOLOHH_22280 0.48 +0.2
4,400,450 + artI NOLOHH_22280 0.48 +0.4
4,400,565 - artI NOLOHH_22280 0.64 -0.2
4,400,696 + artI NOLOHH_22280 0.82 -0.1
4,400,696 + artI NOLOHH_22280 0.82 +0.6
4,400,795 + -0.3
4,400,828 + +0.6
4,400,828 + -0.3
4,400,829 - +0.7
4,401,035 + artQ NOLOHH_22285 0.28 -0.8
4,401,179 + artQ NOLOHH_22285 0.48 +1.1
4,401,397 - artQ NOLOHH_22285 0.78 -0.1
4,401,703 + artM NOLOHH_22290 0.22 +0.1
4,401,703 + artM NOLOHH_22290 0.22 +0.0
4,401,703 + artM NOLOHH_22290 0.22 -0.9
4,401,705 + artM NOLOHH_22290 0.23 -0.1
4,401,705 + artM NOLOHH_22290 0.23 -1.0
4,401,827 + artM NOLOHH_22290 0.41 -2.0
4,401,827 + artM NOLOHH_22290 0.41 +1.5

Or see this region's nucleotide sequence