Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybfE and fldA are separated by 139 nucleotides fldA and uof are separated by 209 nucleotides uof and fur overlap by 8 nucleotides fur and chiQ are separated by 84 nucleotides chiQ and chiP are separated by 49 nucleotides
NOLOHH_23495: ybfE - LexA regulated protein, at 4,627,409 to 4,627,771
ybfE
NOLOHH_23500: fldA - flavodoxin FldA, at 4,627,911 to 4,628,441
fldA
NOLOHH_23505: uof - fur leader peptide, at 4,628,651 to 4,628,737
uof
NOLOHH_23510: fur - ferric iron uptake transcriptional regulator, at 4,628,730 to 4,629,176
fur
NOLOHH_23515: chiQ - Uncharacterized lipoprotein ChiQ, at 4,629,261 to 4,629,587
chiQ
NOLOHH_23520: chiP - chitoporin, at 4,629,637 to 4,631,043
chiP
Position (kb)
4628
4629
4630 Strain fitness (log2 ratio)
-2
-1
0
1 at 4627.753 kb on + strand at 4627.787 kb on + strand at 4627.788 kb on - strand at 4627.788 kb on - strand at 4628.432 kb on + strand at 4628.432 kb on + strand at 4628.530 kb on + strand at 4628.530 kb on + strand at 4628.530 kb on + strand at 4628.531 kb on - strand at 4628.571 kb on + strand at 4628.572 kb on - strand at 4628.577 kb on + strand at 4628.578 kb on - strand at 4628.596 kb on - strand at 4628.632 kb on + strand at 4628.647 kb on + strand at 4628.712 kb on + strand, within uof at 4628.845 kb on + strand, within fur at 4628.846 kb on - strand, within fur at 4628.848 kb on - strand, within fur at 4628.893 kb on + strand, within fur at 4628.902 kb on + strand, within fur at 4629.174 kb on + strand at 4629.250 kb on - strand at 4629.263 kb on - strand at 4629.373 kb on - strand, within chiQ at 4629.491 kb on - strand, within chiQ at 4629.491 kb on - strand, within chiQ at 4629.491 kb on - strand, within chiQ at 4629.491 kb on - strand, within chiQ at 4629.744 kb on - strand at 4629.854 kb on + strand, within chiP at 4630.076 kb on + strand, within chiP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 4,627,753 + -0.3 4,627,787 + +0.3 4,627,788 - -0.8 4,627,788 - +1.1 4,628,432 + +0.3 4,628,432 + +0.0 4,628,530 + +0.0 4,628,530 + -1.3 4,628,530 + -1.4 4,628,531 - +0.4 4,628,571 + +0.2 4,628,572 - +0.2 4,628,577 + +1.1 4,628,578 - -0.9 4,628,596 - +0.4 4,628,632 + -0.7 4,628,647 + -0.9 4,628,712 + uof NOLOHH_23505 0.70 -1.1 4,628,845 + fur NOLOHH_23510 0.26 -2.0 4,628,846 - fur NOLOHH_23510 0.26 +0.0 4,628,848 - fur NOLOHH_23510 0.26 -0.6 4,628,893 + fur NOLOHH_23510 0.36 -1.3 4,628,902 + fur NOLOHH_23510 0.38 -2.0 4,629,174 + -1.2 4,629,250 - -0.3 4,629,263 - +0.3 4,629,373 - chiQ NOLOHH_23515 0.34 +0.7 4,629,491 - chiQ NOLOHH_23515 0.70 +0.7 4,629,491 - chiQ NOLOHH_23515 0.70 -0.5 4,629,491 - chiQ NOLOHH_23515 0.70 -0.4 4,629,491 - chiQ NOLOHH_23515 0.70 -0.6 4,629,744 - +0.6 4,629,854 + chiP NOLOHH_23520 0.15 -2.2 4,630,076 + chiP NOLOHH_23520 0.31 -0.2
Or see this region's nucleotide sequence