Strain Fitness in Escherichia coli ECOR27 around NOLOHH_23510

Experiment: Bas10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybfE and fldA are separated by 139 nucleotidesfldA and uof are separated by 209 nucleotidesuof and fur overlap by 8 nucleotidesfur and chiQ are separated by 84 nucleotideschiQ and chiP are separated by 49 nucleotides NOLOHH_23495: ybfE - LexA regulated protein, at 4,627,409 to 4,627,771 ybfE NOLOHH_23500: fldA - flavodoxin FldA, at 4,627,911 to 4,628,441 fldA NOLOHH_23505: uof - fur leader peptide, at 4,628,651 to 4,628,737 uof NOLOHH_23510: fur - ferric iron uptake transcriptional regulator, at 4,628,730 to 4,629,176 fur NOLOHH_23515: chiQ - Uncharacterized lipoprotein ChiQ, at 4,629,261 to 4,629,587 chiQ NOLOHH_23520: chiP - chitoporin, at 4,629,637 to 4,631,043 chiP Position (kb) 4628 4629 4630Strain fitness (log2 ratio) -2 -1 0 1at 4627.753 kb on + strandat 4627.787 kb on + strandat 4627.788 kb on - strandat 4627.788 kb on - strandat 4628.432 kb on + strandat 4628.432 kb on + strandat 4628.530 kb on + strandat 4628.530 kb on + strandat 4628.530 kb on + strandat 4628.531 kb on - strandat 4628.571 kb on + strandat 4628.572 kb on - strandat 4628.577 kb on + strandat 4628.578 kb on - strandat 4628.596 kb on - strandat 4628.632 kb on + strandat 4628.647 kb on + strandat 4628.712 kb on + strand, within uofat 4628.845 kb on + strand, within furat 4628.846 kb on - strand, within furat 4628.848 kb on - strand, within furat 4628.893 kb on + strand, within furat 4628.902 kb on + strand, within furat 4629.174 kb on + strandat 4629.250 kb on - strandat 4629.263 kb on - strandat 4629.373 kb on - strand, within chiQat 4629.491 kb on - strand, within chiQat 4629.491 kb on - strand, within chiQat 4629.491 kb on - strand, within chiQat 4629.491 kb on - strand, within chiQat 4629.744 kb on - strandat 4629.854 kb on + strand, within chiPat 4630.076 kb on + strand, within chiP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
remove
4,627,753 + -0.3
4,627,787 + +0.3
4,627,788 - -0.8
4,627,788 - +1.1
4,628,432 + +0.3
4,628,432 + +0.0
4,628,530 + +0.0
4,628,530 + -1.3
4,628,530 + -1.4
4,628,531 - +0.4
4,628,571 + +0.2
4,628,572 - +0.2
4,628,577 + +1.1
4,628,578 - -0.9
4,628,596 - +0.4
4,628,632 + -0.7
4,628,647 + -0.9
4,628,712 + uof NOLOHH_23505 0.70 -1.1
4,628,845 + fur NOLOHH_23510 0.26 -2.0
4,628,846 - fur NOLOHH_23510 0.26 +0.0
4,628,848 - fur NOLOHH_23510 0.26 -0.6
4,628,893 + fur NOLOHH_23510 0.36 -1.3
4,628,902 + fur NOLOHH_23510 0.38 -2.0
4,629,174 + -1.2
4,629,250 - -0.3
4,629,263 - +0.3
4,629,373 - chiQ NOLOHH_23515 0.34 +0.7
4,629,491 - chiQ NOLOHH_23515 0.70 +0.7
4,629,491 - chiQ NOLOHH_23515 0.70 -0.5
4,629,491 - chiQ NOLOHH_23515 0.70 -0.4
4,629,491 - chiQ NOLOHH_23515 0.70 -0.6
4,629,744 - +0.6
4,629,854 + chiP NOLOHH_23520 0.15 -2.2
4,630,076 + chiP NOLOHH_23520 0.31 -0.2

Or see this region's nucleotide sequence