Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgL and flgK are separated by 11 nucleotides flgK and flgJ are separated by 65 nucleotides
NOLOHH_21155: flgL - flagellar hook-associated protein FlgL, at 4,163,101 to 4,164,054
flgL
NOLOHH_21160: flgK - flagellar hook-associated protein FlgK, at 4,164,066 to 4,165,709
flgK
NOLOHH_21165: flgJ - flagellar assembly peptidoglycan hydrolase FlgJ, at 4,165,775 to 4,166,716
flgJ
Position (kb) 4164
4165
4166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4163.070 kb on - strand at 4163.070 kb on - strand at 4163.084 kb on + strand at 4163.085 kb on - strand at 4163.187 kb on - strand at 4163.267 kb on - strand, within flgL at 4163.332 kb on - strand, within flgL at 4163.500 kb on - strand, within flgL at 4163.540 kb on - strand, within flgL at 4163.578 kb on - strand, within flgL at 4163.598 kb on - strand, within flgL at 4163.637 kb on + strand, within flgL at 4163.797 kb on - strand, within flgL at 4163.819 kb on - strand, within flgL at 4163.819 kb on - strand, within flgL at 4163.819 kb on - strand, within flgL at 4164.296 kb on - strand, within flgK at 4164.436 kb on - strand, within flgK at 4164.436 kb on - strand, within flgK at 4164.463 kb on - strand, within flgK at 4164.945 kb on - strand, within flgK at 4165.035 kb on - strand, within flgK at 4165.037 kb on - strand, within flgK at 4165.037 kb on - strand, within flgK at 4165.037 kb on - strand, within flgK at 4165.191 kb on - strand, within flgK at 4165.196 kb on - strand, within flgK at 4165.196 kb on - strand, within flgK at 4165.419 kb on - strand, within flgK at 4165.464 kb on - strand, within flgK at 4165.590 kb on - strand at 4165.622 kb on + strand at 4165.624 kb on + strand at 4165.638 kb on - strand at 4165.641 kb on - strand at 4165.695 kb on - strand at 4165.723 kb on - strand at 4165.798 kb on + strand at 4165.798 kb on + strand at 4166.002 kb on - strand, within flgJ at 4166.010 kb on + strand, within flgJ at 4166.125 kb on - strand, within flgJ at 4166.295 kb on + strand, within flgJ at 4166.497 kb on - strand, within flgJ at 4166.497 kb on - strand, within flgJ at 4166.497 kb on - strand, within flgJ at 4166.497 kb on - strand, within flgJ at 4166.497 kb on - strand, within flgJ at 4166.501 kb on - strand, within flgJ at 4166.507 kb on - strand, within flgJ at 4166.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 4,163,070 - -1.1 4,163,070 - -2.4 4,163,084 + +0.2 4,163,085 - -1.1 4,163,187 - +0.5 4,163,267 - flgL NOLOHH_21155 0.17 +0.3 4,163,332 - flgL NOLOHH_21155 0.24 +2.4 4,163,500 - flgL NOLOHH_21155 0.42 -0.6 4,163,540 - flgL NOLOHH_21155 0.46 +0.8 4,163,578 - flgL NOLOHH_21155 0.50 +0.7 4,163,598 - flgL NOLOHH_21155 0.52 +0.1 4,163,637 + flgL NOLOHH_21155 0.56 +0.3 4,163,797 - flgL NOLOHH_21155 0.73 +1.1 4,163,819 - flgL NOLOHH_21155 0.75 -1.0 4,163,819 - flgL NOLOHH_21155 0.75 +1.0 4,163,819 - flgL NOLOHH_21155 0.75 -0.7 4,164,296 - flgK NOLOHH_21160 0.14 -0.0 4,164,436 - flgK NOLOHH_21160 0.23 +1.9 4,164,436 - flgK NOLOHH_21160 0.23 +0.1 4,164,463 - flgK NOLOHH_21160 0.24 -1.9 4,164,945 - flgK NOLOHH_21160 0.53 +0.6 4,165,035 - flgK NOLOHH_21160 0.59 +0.8 4,165,037 - flgK NOLOHH_21160 0.59 +0.5 4,165,037 - flgK NOLOHH_21160 0.59 +0.1 4,165,037 - flgK NOLOHH_21160 0.59 +0.5 4,165,191 - flgK NOLOHH_21160 0.68 +0.4 4,165,196 - flgK NOLOHH_21160 0.69 +1.0 4,165,196 - flgK NOLOHH_21160 0.69 -1.7 4,165,419 - flgK NOLOHH_21160 0.82 -0.1 4,165,464 - flgK NOLOHH_21160 0.85 -0.5 4,165,590 - +0.6 4,165,622 + +0.5 4,165,624 + +1.5 4,165,638 - -1.5 4,165,641 - +0.6 4,165,695 - -0.3 4,165,723 - +0.7 4,165,798 + -0.7 4,165,798 + -3.0 4,166,002 - flgJ NOLOHH_21165 0.24 -0.3 4,166,010 + flgJ NOLOHH_21165 0.25 +0.2 4,166,125 - flgJ NOLOHH_21165 0.37 -1.3 4,166,295 + flgJ NOLOHH_21165 0.55 +0.7 4,166,497 - flgJ NOLOHH_21165 0.77 -0.4 4,166,497 - flgJ NOLOHH_21165 0.77 +0.1 4,166,497 - flgJ NOLOHH_21165 0.77 +0.5 4,166,497 - flgJ NOLOHH_21165 0.77 -0.4 4,166,497 - flgJ NOLOHH_21165 0.77 -1.0 4,166,501 - flgJ NOLOHH_21165 0.77 -1.2 4,166,507 - flgJ NOLOHH_21165 0.78 -0.1 4,166,697 - -1.3
Or see this region's nucleotide sequence