Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19505

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttynA and feaB are separated by 57 nucleotidesfeaB and feaR are separated by 235 nucleotides NOLOHH_19500: tynA - primary-amine oxidase, at 3,845,763 to 3,848,036 tynA NOLOHH_19505: feaB - phenylacetaldehyde dehydrogenase, at 3,848,094 to 3,849,593 feaB NOLOHH_19510: feaR - transcriptional regulator FeaR, at 3,849,829 to 3,850,734 feaR Position (kb) 3848 3849 3850Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3847.167 kb on - strand, within tynAat 3847.337 kb on + strand, within tynAat 3847.460 kb on - strand, within tynAat 3847.851 kb on + strandat 3848.099 kb on - strandat 3848.209 kb on - strandat 3848.209 kb on - strandat 3848.443 kb on + strand, within feaBat 3848.444 kb on - strand, within feaBat 3848.444 kb on - strand, within feaBat 3848.444 kb on - strand, within feaBat 3848.447 kb on - strand, within feaBat 3848.447 kb on - strand, within feaBat 3848.680 kb on - strand, within feaBat 3849.417 kb on + strand, within feaBat 3849.418 kb on - strand, within feaBat 3849.525 kb on - strandat 3849.526 kb on + strandat 3849.577 kb on - strandat 3849.577 kb on - strandat 3849.608 kb on - strandat 3849.720 kb on - strandat 3849.744 kb on - strandat 3849.885 kb on - strandat 3850.119 kb on + strand, within feaRat 3850.469 kb on + strand, within feaRat 3850.470 kb on - strand, within feaRat 3850.508 kb on + strand, within feaR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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3,847,167 - tynA NOLOHH_19500 0.62 -0.7
3,847,337 + tynA NOLOHH_19500 0.69 +2.2
3,847,460 - tynA NOLOHH_19500 0.75 +0.5
3,847,851 + -0.5
3,848,099 - -0.8
3,848,209 - -2.8
3,848,209 - +0.5
3,848,443 + feaB NOLOHH_19505 0.23 -1.3
3,848,444 - feaB NOLOHH_19505 0.23 -0.7
3,848,444 - feaB NOLOHH_19505 0.23 -0.1
3,848,444 - feaB NOLOHH_19505 0.23 -0.8
3,848,447 - feaB NOLOHH_19505 0.24 -2.5
3,848,447 - feaB NOLOHH_19505 0.24 +0.2
3,848,680 - feaB NOLOHH_19505 0.39 -0.7
3,849,417 + feaB NOLOHH_19505 0.88 -0.5
3,849,418 - feaB NOLOHH_19505 0.88 -1.8
3,849,525 - +0.2
3,849,526 + -0.1
3,849,577 - +1.4
3,849,577 - -0.4
3,849,608 - +0.6
3,849,720 - +0.6
3,849,744 - +0.6
3,849,885 - +0.2
3,850,119 + feaR NOLOHH_19510 0.32 -0.3
3,850,469 + feaR NOLOHH_19510 0.71 -1.3
3,850,470 - feaR NOLOHH_19510 0.71 -1.3
3,850,508 + feaR NOLOHH_19510 0.75 -0.5

Or see this region's nucleotide sequence