Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18855

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthipA and fimA are separated by 952 nucleotidesfimA and fimC are separated by 360 nucleotides NOLOHH_18850: hipA - type II toxin-antitoxin system serine/threonine protein kinase toxin HipA, at 3,692,886 to 3,694,208 hipA NOLOHH_18855: fimA - type 1 fimbrial major subunit FimA, at 3,695,161 to 3,695,724 fimA NOLOHH_18860: fimC - fimbrial chaperone protein FimC, at 3,696,085 to 3,696,795 fimC Position (kb) 3695 3696Strain fitness (log2 ratio) -2 -1 0 1at 3694.918 kb on + strandat 3695.496 kb on + strand, within fimAat 3695.720 kb on + strandat 3695.744 kb on + strandat 3696.520 kb on + strand, within fimC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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3,694,918 + -0.2
3,695,496 + fimA NOLOHH_18855 0.59 -2.2
3,695,720 + -0.0
3,695,744 + -0.0
3,696,520 + fimC NOLOHH_18860 0.61 -0.7

Or see this region's nucleotide sequence