Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17285

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjK and ydjJ are separated by 16 nucleotidesydjJ and ydjI are separated by 20 nucleotidesydjI and ydjH are separated by 4 nucleotides NOLOHH_17280: ydjK - Putative metabolite transport protein YdjK, at 3,391,696 to 3,393,075 ydjK NOLOHH_17285: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 3,393,092 to 3,394,135 ydjJ NOLOHH_17290: ydjI - Uncharacterized protein YdjI, at 3,394,156 to 3,394,992 ydjI NOLOHH_17295: ydjH - Uncharacterized sugar kinase YdjH, at 3,394,997 to 3,395,944 ydjH Position (kb) 3393 3394 3395Strain fitness (log2 ratio) -1 0 1at 3392.110 kb on + strand, within ydjKat 3392.110 kb on + strand, within ydjKat 3392.110 kb on + strand, within ydjKat 3392.112 kb on + strand, within ydjKat 3392.261 kb on + strand, within ydjKat 3392.543 kb on + strand, within ydjKat 3392.796 kb on + strand, within ydjKat 3392.796 kb on + strand, within ydjKat 3392.800 kb on + strand, within ydjKat 3392.914 kb on + strand, within ydjKat 3392.937 kb on + strand, within ydjKat 3393.202 kb on + strand, within ydjJat 3393.473 kb on + strand, within ydjJat 3393.857 kb on + strand, within ydjJat 3393.857 kb on + strand, within ydjJat 3394.609 kb on + strand, within ydjI

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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3,392,110 + ydjK NOLOHH_17280 0.30 -0.5
3,392,110 + ydjK NOLOHH_17280 0.30 -0.5
3,392,110 + ydjK NOLOHH_17280 0.30 -1.5
3,392,112 + ydjK NOLOHH_17280 0.30 -1.4
3,392,261 + ydjK NOLOHH_17280 0.41 +1.0
3,392,543 + ydjK NOLOHH_17280 0.61 -1.6
3,392,796 + ydjK NOLOHH_17280 0.80 +0.3
3,392,796 + ydjK NOLOHH_17280 0.80 -1.1
3,392,800 + ydjK NOLOHH_17280 0.80 +0.6
3,392,914 + ydjK NOLOHH_17280 0.88 +1.1
3,392,937 + ydjK NOLOHH_17280 0.90 -0.7
3,393,202 + ydjJ NOLOHH_17285 0.11 +1.3
3,393,473 + ydjJ NOLOHH_17285 0.36 -0.7
3,393,857 + ydjJ NOLOHH_17285 0.73 -0.3
3,393,857 + ydjJ NOLOHH_17285 0.73 -0.8
3,394,609 + ydjI NOLOHH_17290 0.54 +1.3

Or see this region's nucleotide sequence