Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dmlR and leuE are separated by 126 nucleotides leuE and yeaR are separated by 172 nucleotides yeaR and NOLOHH_17165 are separated by 3 nucleotides NOLOHH_17165 and insQ are separated by 514 nucleotides
NOLOHH_17150: dmlR - DNA-binding transcriptional regulator DmlR, at 3,368,365 to 3,369,288
dmlR
NOLOHH_17155: leuE - leucine efflux protein LeuE, at 3,369,415 to 3,370,053
leuE
NOLOHH_17160: yeaR - Uncharacterized protein YeaR, at 3,370,226 to 3,370,585
yeaR
NOLOHH_17165: NOLOHH_17165 - Protein YoaG, at 3,370,589 to 3,370,777
_17165
NOLOHH_17170: insQ - Putative RNA-guided DNA endonuclease InsQ, at 3,371,292 to 3,372,440
insQ
Position (kb) 3370
3371 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3369.402 kb on + strand at 3369.451 kb on + strand at 3369.621 kb on + strand, within leuE at 3369.650 kb on + strand, within leuE at 3369.650 kb on + strand, within leuE at 3369.723 kb on + strand, within leuE at 3369.814 kb on + strand, within leuE at 3369.814 kb on + strand, within leuE at 3369.814 kb on + strand, within leuE at 3369.913 kb on + strand, within leuE at 3369.959 kb on + strand, within leuE at 3369.959 kb on + strand, within leuE at 3369.959 kb on + strand, within leuE at 3369.959 kb on + strand, within leuE at 3369.959 kb on + strand, within leuE at 3369.963 kb on + strand, within leuE at 3370.498 kb on + strand, within yeaR at 3370.502 kb on + strand, within yeaR at 3370.604 kb on + strand at 3370.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 3,369,402 + +0.9 3,369,451 + +1.1 3,369,621 + leuE NOLOHH_17155 0.32 -1.1 3,369,650 + leuE NOLOHH_17155 0.37 +0.3 3,369,650 + leuE NOLOHH_17155 0.37 +0.0 3,369,723 + leuE NOLOHH_17155 0.48 -0.2 3,369,814 + leuE NOLOHH_17155 0.62 -0.9 3,369,814 + leuE NOLOHH_17155 0.62 -1.1 3,369,814 + leuE NOLOHH_17155 0.62 -0.8 3,369,913 + leuE NOLOHH_17155 0.78 -1.3 3,369,959 + leuE NOLOHH_17155 0.85 -1.0 3,369,959 + leuE NOLOHH_17155 0.85 +0.5 3,369,959 + leuE NOLOHH_17155 0.85 -0.0 3,369,959 + leuE NOLOHH_17155 0.85 +0.3 3,369,959 + leuE NOLOHH_17155 0.85 +1.1 3,369,963 + leuE NOLOHH_17155 0.86 +0.3 3,370,498 + yeaR NOLOHH_17160 0.76 -3.0 3,370,502 + yeaR NOLOHH_17160 0.77 -0.0 3,370,604 + -0.1 3,370,604 + -2.1
Or see this region's nucleotide sequence