Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16880

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyebG and yebF are separated by 66 nucleotidesyebF and NOLOHH_16875 overlap by 87 nucleotidesNOLOHH_16875 and NOLOHH_16880 are separated by 36 nucleotidesNOLOHH_16880 and yebE are separated by 59 nucleotidesyebE and ptrB are separated by 208 nucleotides NOLOHH_16865: yebG - DNA damage-inducible protein YebG, at 3,317,941 to 3,318,231 yebG NOLOHH_16870: yebF - Protein YebF, at 3,318,298 to 3,318,654 yebF NOLOHH_16875: NOLOHH_16875 - hypothetical protein, at 3,318,568 to 3,318,774 _16875 NOLOHH_16880: NOLOHH_16880 - hypothetical protein, at 3,318,811 to 3,318,921 _16880 NOLOHH_16885: yebE - Inner membrane protein YebE, at 3,318,981 to 3,319,640 yebE NOLOHH_16890: ptrB - oligopeptidase B, at 3,319,849 to 3,321,909 ptrB Position (kb) 3318 3319Strain fitness (log2 ratio) -2 -1 0 1at 3317.825 kb on + strandat 3317.923 kb on + strandat 3317.955 kb on + strandat 3317.955 kb on + strandat 3317.959 kb on + strandat 3317.959 kb on + strandat 3317.959 kb on + strandat 3317.963 kb on + strandat 3318.022 kb on + strand, within yebGat 3318.257 kb on + strandat 3318.437 kb on + strand, within yebFat 3318.552 kb on + strand, within yebFat 3318.582 kb on + strandat 3318.582 kb on + strandat 3318.850 kb on - strand, within NOLOHH_16880at 3318.893 kb on - strand, within NOLOHH_16880at 3318.917 kb on + strandat 3318.947 kb on + strandat 3318.956 kb on + strandat 3318.957 kb on - strandat 3318.980 kb on + strandat 3319.034 kb on + strandat 3319.147 kb on - strand, within yebEat 3319.205 kb on + strand, within yebEat 3319.265 kb on + strand, within yebEat 3319.283 kb on + strand, within yebEat 3319.405 kb on + strand, within yebEat 3319.542 kb on + strand, within yebEat 3319.765 kb on + strandat 3319.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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3,317,825 + -0.4
3,317,923 + +0.5
3,317,955 + +1.0
3,317,955 + +0.1
3,317,959 + +1.5
3,317,959 + +1.5
3,317,959 + +0.7
3,317,963 + -0.1
3,318,022 + yebG NOLOHH_16865 0.28 -0.3
3,318,257 + -2.3
3,318,437 + yebF NOLOHH_16870 0.39 -0.6
3,318,552 + yebF NOLOHH_16870 0.71 +0.2
3,318,582 + +0.6
3,318,582 + -1.6
3,318,850 - NOLOHH_16880 0.35 -1.2
3,318,893 - NOLOHH_16880 0.74 -0.8
3,318,917 + +0.9
3,318,947 + +0.2
3,318,956 + -0.8
3,318,957 - +1.2
3,318,980 + +1.6
3,319,034 + +0.7
3,319,147 - yebE NOLOHH_16885 0.25 -1.8
3,319,205 + yebE NOLOHH_16885 0.34 +0.1
3,319,265 + yebE NOLOHH_16885 0.43 -0.6
3,319,283 + yebE NOLOHH_16885 0.46 +0.1
3,319,405 + yebE NOLOHH_16885 0.64 -0.0
3,319,542 + yebE NOLOHH_16885 0.85 -0.1
3,319,765 + -1.3
3,319,915 + +0.2

Or see this region's nucleotide sequence