Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15425

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_15415 and yegX are separated by 64 nucleotidesyegX and yegW are separated by 51 nucleotidesyegW and yegV overlap by 27 nucleotidesyegV and NOLOHH_15435 overlap by 4 nucleotides NOLOHH_15415: NOLOHH_15415 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,031,077 to 3,031,877 _15415 NOLOHH_15420: yegX - Uncharacterized protein YegX, at 3,031,942 to 3,032,760 yegX NOLOHH_15425: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 3,032,812 to 3,033,558 yegW NOLOHH_15430: yegV - Uncharacterized sugar kinase YegV, at 3,033,532 to 3,034,497 yegV NOLOHH_15435: NOLOHH_15435 - ADP-ribosylglycohydrolase family protein, at 3,034,494 to 3,035,498 _15435 Position (kb) 3032 3033 3034Strain fitness (log2 ratio) -3 -2 -1 0 1at 3031.884 kb on + strandat 3031.884 kb on + strandat 3031.884 kb on + strandat 3031.884 kb on + strandat 3031.884 kb on + strandat 3031.885 kb on - strandat 3031.888 kb on - strandat 3031.889 kb on + strandat 3031.889 kb on + strandat 3031.950 kb on - strandat 3031.983 kb on - strandat 3032.074 kb on + strand, within yegXat 3032.075 kb on - strand, within yegXat 3032.075 kb on - strand, within yegXat 3032.075 kb on - strand, within yegXat 3032.075 kb on - strand, within yegXat 3032.075 kb on - strand, within yegXat 3032.075 kb on - strand, within yegXat 3032.086 kb on + strand, within yegXat 3032.086 kb on + strand, within yegXat 3032.086 kb on + strand, within yegXat 3032.093 kb on - strand, within yegXat 3032.134 kb on + strand, within yegXat 3032.134 kb on + strand, within yegXat 3032.136 kb on + strand, within yegXat 3032.137 kb on - strand, within yegXat 3032.150 kb on + strand, within yegXat 3032.151 kb on - strand, within yegXat 3032.223 kb on - strand, within yegXat 3032.235 kb on + strand, within yegXat 3032.236 kb on - strand, within yegXat 3032.472 kb on - strand, within yegXat 3032.483 kb on + strand, within yegXat 3032.564 kb on - strand, within yegXat 3032.564 kb on - strand, within yegXat 3032.596 kb on + strand, within yegXat 3032.596 kb on + strand, within yegXat 3032.596 kb on + strand, within yegXat 3032.596 kb on + strand, within yegXat 3032.599 kb on + strand, within yegXat 3032.599 kb on + strand, within yegXat 3032.694 kb on + strandat 3032.699 kb on + strandat 3032.856 kb on + strandat 3032.890 kb on - strand, within yegWat 3032.947 kb on - strand, within yegWat 3033.305 kb on + strand, within yegWat 3033.305 kb on + strand, within yegWat 3033.346 kb on + strand, within yegWat 3033.506 kb on - strandat 3033.514 kb on - strandat 3033.534 kb on - strandat 3033.556 kb on + strandat 3033.905 kb on - strand, within yegVat 3033.935 kb on - strand, within yegVat 3033.958 kb on - strand, within yegVat 3034.137 kb on + strand, within yegVat 3034.138 kb on - strand, within yegVat 3034.138 kb on - strand, within yegVat 3034.245 kb on + strand, within yegVat 3034.397 kb on + strand, within yegVat 3034.398 kb on - strand, within yegVat 3034.498 kb on - strandat 3034.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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3,031,884 + -0.5
3,031,884 + +0.5
3,031,884 + -1.0
3,031,884 + +0.0
3,031,884 + +0.3
3,031,885 - -0.2
3,031,888 - -0.6
3,031,889 + +0.4
3,031,889 + +0.0
3,031,950 - -0.0
3,031,983 - +0.5
3,032,074 + yegX NOLOHH_15420 0.16 -0.3
3,032,075 - yegX NOLOHH_15420 0.16 -0.1
3,032,075 - yegX NOLOHH_15420 0.16 -0.5
3,032,075 - yegX NOLOHH_15420 0.16 -0.9
3,032,075 - yegX NOLOHH_15420 0.16 -0.9
3,032,075 - yegX NOLOHH_15420 0.16 +0.2
3,032,075 - yegX NOLOHH_15420 0.16 -1.1
3,032,086 + yegX NOLOHH_15420 0.18 +0.0
3,032,086 + yegX NOLOHH_15420 0.18 -0.0
3,032,086 + yegX NOLOHH_15420 0.18 +0.1
3,032,093 - yegX NOLOHH_15420 0.18 +0.3
3,032,134 + yegX NOLOHH_15420 0.23 -0.9
3,032,134 + yegX NOLOHH_15420 0.23 +0.7
3,032,136 + yegX NOLOHH_15420 0.24 -0.2
3,032,137 - yegX NOLOHH_15420 0.24 +0.9
3,032,150 + yegX NOLOHH_15420 0.25 -0.3
3,032,151 - yegX NOLOHH_15420 0.26 -0.3
3,032,223 - yegX NOLOHH_15420 0.34 +1.2
3,032,235 + yegX NOLOHH_15420 0.36 +0.1
3,032,236 - yegX NOLOHH_15420 0.36 +0.6
3,032,472 - yegX NOLOHH_15420 0.65 +1.0
3,032,483 + yegX NOLOHH_15420 0.66 -1.0
3,032,564 - yegX NOLOHH_15420 0.76 +1.4
3,032,564 - yegX NOLOHH_15420 0.76 +0.2
3,032,596 + yegX NOLOHH_15420 0.80 -3.0
3,032,596 + yegX NOLOHH_15420 0.80 -0.3
3,032,596 + yegX NOLOHH_15420 0.80 -0.4
3,032,596 + yegX NOLOHH_15420 0.80 +0.7
3,032,599 + yegX NOLOHH_15420 0.80 +0.4
3,032,599 + yegX NOLOHH_15420 0.80 +0.3
3,032,694 + +0.1
3,032,699 + -0.0
3,032,856 + +0.1
3,032,890 - yegW NOLOHH_15425 0.10 -0.8
3,032,947 - yegW NOLOHH_15425 0.18 -2.2
3,033,305 + yegW NOLOHH_15425 0.66 -0.6
3,033,305 + yegW NOLOHH_15425 0.66 +1.2
3,033,346 + yegW NOLOHH_15425 0.71 -2.3
3,033,506 - -0.9
3,033,514 - +0.5
3,033,534 - -0.0
3,033,556 + +0.7
3,033,905 - yegV NOLOHH_15430 0.39 -0.7
3,033,935 - yegV NOLOHH_15430 0.42 -0.4
3,033,958 - yegV NOLOHH_15430 0.44 +0.6
3,034,137 + yegV NOLOHH_15430 0.63 +0.0
3,034,138 - yegV NOLOHH_15430 0.63 +0.5
3,034,138 - yegV NOLOHH_15430 0.63 -0.0
3,034,245 + yegV NOLOHH_15430 0.74 -0.1
3,034,397 + yegV NOLOHH_15430 0.90 -0.5
3,034,398 - yegV NOLOHH_15430 0.90 +0.8
3,034,498 - +0.5
3,034,541 - +0.2

Or see this region's nucleotide sequence