Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_15415 and yegX are separated by 64 nucleotides yegX and yegW are separated by 51 nucleotides yegW and yegV overlap by 27 nucleotides yegV and NOLOHH_15435 overlap by 4 nucleotides
NOLOHH_15415: NOLOHH_15415 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,031,077 to 3,031,877
_15415
NOLOHH_15420: yegX - Uncharacterized protein YegX, at 3,031,942 to 3,032,760
yegX
NOLOHH_15425: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 3,032,812 to 3,033,558
yegW
NOLOHH_15430: yegV - Uncharacterized sugar kinase YegV, at 3,033,532 to 3,034,497
yegV
NOLOHH_15435: NOLOHH_15435 - ADP-ribosylglycohydrolase family protein, at 3,034,494 to 3,035,498
_15435
Position (kb)
3032
3033
3034 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3031.884 kb on + strand at 3031.884 kb on + strand at 3031.884 kb on + strand at 3031.884 kb on + strand at 3031.884 kb on + strand at 3031.885 kb on - strand at 3031.888 kb on - strand at 3031.889 kb on + strand at 3031.889 kb on + strand at 3031.950 kb on - strand at 3031.983 kb on - strand at 3032.074 kb on + strand, within yegX at 3032.075 kb on - strand, within yegX at 3032.075 kb on - strand, within yegX at 3032.075 kb on - strand, within yegX at 3032.075 kb on - strand, within yegX at 3032.075 kb on - strand, within yegX at 3032.075 kb on - strand, within yegX at 3032.086 kb on + strand, within yegX at 3032.086 kb on + strand, within yegX at 3032.086 kb on + strand, within yegX at 3032.093 kb on - strand, within yegX at 3032.134 kb on + strand, within yegX at 3032.134 kb on + strand, within yegX at 3032.136 kb on + strand, within yegX at 3032.137 kb on - strand, within yegX at 3032.150 kb on + strand, within yegX at 3032.151 kb on - strand, within yegX at 3032.223 kb on - strand, within yegX at 3032.235 kb on + strand, within yegX at 3032.236 kb on - strand, within yegX at 3032.472 kb on - strand, within yegX at 3032.483 kb on + strand, within yegX at 3032.564 kb on - strand, within yegX at 3032.564 kb on - strand, within yegX at 3032.596 kb on + strand, within yegX at 3032.596 kb on + strand, within yegX at 3032.596 kb on + strand, within yegX at 3032.596 kb on + strand, within yegX at 3032.599 kb on + strand, within yegX at 3032.599 kb on + strand, within yegX at 3032.694 kb on + strand at 3032.699 kb on + strand at 3032.856 kb on + strand at 3032.890 kb on - strand, within yegW at 3032.947 kb on - strand, within yegW at 3033.305 kb on + strand, within yegW at 3033.305 kb on + strand, within yegW at 3033.346 kb on + strand, within yegW at 3033.506 kb on - strand at 3033.514 kb on - strand at 3033.534 kb on - strand at 3033.556 kb on + strand at 3033.905 kb on - strand, within yegV at 3033.935 kb on - strand, within yegV at 3033.958 kb on - strand, within yegV at 3034.137 kb on + strand, within yegV at 3034.138 kb on - strand, within yegV at 3034.138 kb on - strand, within yegV at 3034.245 kb on + strand, within yegV at 3034.397 kb on + strand, within yegV at 3034.398 kb on - strand, within yegV at 3034.498 kb on - strand at 3034.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 3,031,884 + -0.5 3,031,884 + +0.5 3,031,884 + -1.0 3,031,884 + +0.0 3,031,884 + +0.3 3,031,885 - -0.2 3,031,888 - -0.6 3,031,889 + +0.4 3,031,889 + +0.0 3,031,950 - -0.0 3,031,983 - +0.5 3,032,074 + yegX NOLOHH_15420 0.16 -0.3 3,032,075 - yegX NOLOHH_15420 0.16 -0.1 3,032,075 - yegX NOLOHH_15420 0.16 -0.5 3,032,075 - yegX NOLOHH_15420 0.16 -0.9 3,032,075 - yegX NOLOHH_15420 0.16 -0.9 3,032,075 - yegX NOLOHH_15420 0.16 +0.2 3,032,075 - yegX NOLOHH_15420 0.16 -1.1 3,032,086 + yegX NOLOHH_15420 0.18 +0.0 3,032,086 + yegX NOLOHH_15420 0.18 -0.0 3,032,086 + yegX NOLOHH_15420 0.18 +0.1 3,032,093 - yegX NOLOHH_15420 0.18 +0.3 3,032,134 + yegX NOLOHH_15420 0.23 -0.9 3,032,134 + yegX NOLOHH_15420 0.23 +0.7 3,032,136 + yegX NOLOHH_15420 0.24 -0.2 3,032,137 - yegX NOLOHH_15420 0.24 +0.9 3,032,150 + yegX NOLOHH_15420 0.25 -0.3 3,032,151 - yegX NOLOHH_15420 0.26 -0.3 3,032,223 - yegX NOLOHH_15420 0.34 +1.2 3,032,235 + yegX NOLOHH_15420 0.36 +0.1 3,032,236 - yegX NOLOHH_15420 0.36 +0.6 3,032,472 - yegX NOLOHH_15420 0.65 +1.0 3,032,483 + yegX NOLOHH_15420 0.66 -1.0 3,032,564 - yegX NOLOHH_15420 0.76 +1.4 3,032,564 - yegX NOLOHH_15420 0.76 +0.2 3,032,596 + yegX NOLOHH_15420 0.80 -3.0 3,032,596 + yegX NOLOHH_15420 0.80 -0.3 3,032,596 + yegX NOLOHH_15420 0.80 -0.4 3,032,596 + yegX NOLOHH_15420 0.80 +0.7 3,032,599 + yegX NOLOHH_15420 0.80 +0.4 3,032,599 + yegX NOLOHH_15420 0.80 +0.3 3,032,694 + +0.1 3,032,699 + -0.0 3,032,856 + +0.1 3,032,890 - yegW NOLOHH_15425 0.10 -0.8 3,032,947 - yegW NOLOHH_15425 0.18 -2.2 3,033,305 + yegW NOLOHH_15425 0.66 -0.6 3,033,305 + yegW NOLOHH_15425 0.66 +1.2 3,033,346 + yegW NOLOHH_15425 0.71 -2.3 3,033,506 - -0.9 3,033,514 - +0.5 3,033,534 - -0.0 3,033,556 + +0.7 3,033,905 - yegV NOLOHH_15430 0.39 -0.7 3,033,935 - yegV NOLOHH_15430 0.42 -0.4 3,033,958 - yegV NOLOHH_15430 0.44 +0.6 3,034,137 + yegV NOLOHH_15430 0.63 +0.0 3,034,138 - yegV NOLOHH_15430 0.63 +0.5 3,034,138 - yegV NOLOHH_15430 0.63 -0.0 3,034,245 + yegV NOLOHH_15430 0.74 -0.1 3,034,397 + yegV NOLOHH_15430 0.90 -0.5 3,034,398 - yegV NOLOHH_15430 0.90 +0.8 3,034,498 - +0.5 3,034,541 - +0.2
Or see this region's nucleotide sequence