Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yejO and Pro_trna are separated by 328 nucleotides Pro_trna and yejM are separated by 74 nucleotides yejM and yejL are separated by 19 nucleotides yejL and yejK are separated by 181 nucleotides
NOLOHH_14900: yejO - Putative uncharacterized outer membrane protein YejO, at 2,915,285 to 2,917,600
yejO
NOLOHH_14905: Pro_trna - tRNA-Pro(ggg), at 2,917,929 to 2,918,005
_trna
NOLOHH_14910: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 2,918,080 to 2,919,840
yejM
NOLOHH_14915: yejL - UPF0352 protein YejL, at 2,919,860 to 2,920,087
yejL
NOLOHH_14920: yejK - nucleoid-associated protein YejK, at 2,920,269 to 2,921,276
yejK
Position (kb)
2918
2919
2920 Strain fitness (log2 ratio)
-2
-1
0
1 at 2917.198 kb on + strand, within yejO at 2917.238 kb on + strand, within yejO at 2917.238 kb on + strand, within yejO at 2917.238 kb on + strand, within yejO at 2917.238 kb on + strand, within yejO at 2917.238 kb on + strand, within yejO at 2917.238 kb on + strand, within yejO at 2917.238 kb on + strand, within yejO at 2917.254 kb on - strand, within yejO at 2917.254 kb on - strand, within yejO at 2917.283 kb on + strand, within yejO at 2917.283 kb on + strand, within yejO at 2917.283 kb on + strand, within yejO at 2917.283 kb on + strand, within yejO at 2917.283 kb on + strand, within yejO at 2917.367 kb on + strand, within yejO at 2917.372 kb on + strand at 2917.372 kb on + strand at 2917.372 kb on + strand at 2917.375 kb on + strand at 2917.435 kb on + strand at 2917.435 kb on + strand at 2917.442 kb on + strand at 2917.442 kb on + strand at 2917.442 kb on + strand at 2917.481 kb on + strand at 2917.626 kb on - strand at 2917.651 kb on + strand at 2917.760 kb on + strand at 2917.760 kb on + strand at 2917.796 kb on - strand at 2917.903 kb on - strand at 2917.998 kb on - strand at 2917.998 kb on - strand at 2918.019 kb on - strand at 2918.019 kb on - strand at 2918.021 kb on + strand at 2918.022 kb on - strand at 2918.022 kb on - strand at 2918.022 kb on - strand at 2918.049 kb on + strand at 2918.168 kb on - strand at 2918.226 kb on + strand at 2918.227 kb on - strand at 2918.227 kb on - strand at 2918.515 kb on - strand, within yejM at 2918.671 kb on - strand, within yejM at 2918.852 kb on - strand, within yejM at 2918.891 kb on + strand, within yejM at 2918.892 kb on - strand, within yejM at 2918.910 kb on - strand, within yejM at 2919.130 kb on - strand, within yejM at 2920.123 kb on - strand at 2920.123 kb on - strand at 2920.123 kb on - strand at 2920.123 kb on - strand at 2920.131 kb on - strand at 2920.210 kb on + strand at 2920.254 kb on - strand at 2920.308 kb on - strand at 2920.308 kb on - strand at 2920.408 kb on - strand, within yejK at 2920.410 kb on - strand, within yejK at 2920.474 kb on + strand, within yejK at 2920.474 kb on + strand, within yejK at 2920.508 kb on + strand, within yejK at 2920.508 kb on + strand, within yejK at 2920.551 kb on + strand, within yejK at 2920.646 kb on + strand, within yejK at 2920.646 kb on + strand, within yejK at 2920.695 kb on - strand, within yejK at 2920.709 kb on + strand, within yejK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 2,917,198 + yejO NOLOHH_14900 0.83 +1.1 2,917,238 + yejO NOLOHH_14900 0.84 -0.2 2,917,238 + yejO NOLOHH_14900 0.84 -1.4 2,917,238 + yejO NOLOHH_14900 0.84 +0.4 2,917,238 + yejO NOLOHH_14900 0.84 -0.9 2,917,238 + yejO NOLOHH_14900 0.84 +0.0 2,917,238 + yejO NOLOHH_14900 0.84 -0.1 2,917,238 + yejO NOLOHH_14900 0.84 +0.7 2,917,254 - yejO NOLOHH_14900 0.85 -0.0 2,917,254 - yejO NOLOHH_14900 0.85 +0.1 2,917,283 + yejO NOLOHH_14900 0.86 +0.3 2,917,283 + yejO NOLOHH_14900 0.86 -0.3 2,917,283 + yejO NOLOHH_14900 0.86 -0.5 2,917,283 + yejO NOLOHH_14900 0.86 -1.3 2,917,283 + yejO NOLOHH_14900 0.86 +0.3 2,917,367 + yejO NOLOHH_14900 0.90 +0.2 2,917,372 + +0.1 2,917,372 + +0.4 2,917,372 + -1.5 2,917,375 + +0.8 2,917,435 + +0.5 2,917,435 + +0.4 2,917,442 + +0.6 2,917,442 + +0.4 2,917,442 + -0.7 2,917,481 + -0.6 2,917,626 - -0.2 2,917,651 + -0.1 2,917,760 + +1.3 2,917,760 + -0.6 2,917,796 - +0.2 2,917,903 - +0.4 2,917,998 - -0.2 2,917,998 - +0.1 2,918,019 - +1.3 2,918,019 - +0.5 2,918,021 + -2.1 2,918,022 - -0.0 2,918,022 - -0.4 2,918,022 - -0.2 2,918,049 + +0.8 2,918,168 - +0.6 2,918,226 + +1.6 2,918,227 - -0.6 2,918,227 - -0.6 2,918,515 - yejM NOLOHH_14910 0.25 -1.6 2,918,671 - yejM NOLOHH_14910 0.34 -0.8 2,918,852 - yejM NOLOHH_14910 0.44 +0.1 2,918,891 + yejM NOLOHH_14910 0.46 -2.7 2,918,892 - yejM NOLOHH_14910 0.46 +0.9 2,918,910 - yejM NOLOHH_14910 0.47 -2.2 2,919,130 - yejM NOLOHH_14910 0.60 -0.7 2,920,123 - -0.6 2,920,123 - -0.5 2,920,123 - +0.1 2,920,123 - -0.6 2,920,131 - +1.3 2,920,210 + +0.3 2,920,254 - -0.3 2,920,308 - -0.1 2,920,308 - +0.0 2,920,408 - yejK NOLOHH_14920 0.14 -0.4 2,920,410 - yejK NOLOHH_14920 0.14 -0.3 2,920,474 + yejK NOLOHH_14920 0.20 -0.1 2,920,474 + yejK NOLOHH_14920 0.20 +0.2 2,920,508 + yejK NOLOHH_14920 0.24 -2.5 2,920,508 + yejK NOLOHH_14920 0.24 -1.9 2,920,551 + yejK NOLOHH_14920 0.28 -0.5 2,920,646 + yejK NOLOHH_14920 0.37 -0.4 2,920,646 + yejK NOLOHH_14920 0.37 +0.9 2,920,695 - yejK NOLOHH_14920 0.42 +0.2 2,920,709 + yejK NOLOHH_14920 0.44 +0.3
Or see this region's nucleotide sequence