Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14910

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyejO and Pro_trna are separated by 328 nucleotidesPro_trna and yejM are separated by 74 nucleotidesyejM and yejL are separated by 19 nucleotidesyejL and yejK are separated by 181 nucleotides NOLOHH_14900: yejO - Putative uncharacterized outer membrane protein YejO, at 2,915,285 to 2,917,600 yejO NOLOHH_14905: Pro_trna - tRNA-Pro(ggg), at 2,917,929 to 2,918,005 _trna NOLOHH_14910: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 2,918,080 to 2,919,840 yejM NOLOHH_14915: yejL - UPF0352 protein YejL, at 2,919,860 to 2,920,087 yejL NOLOHH_14920: yejK - nucleoid-associated protein YejK, at 2,920,269 to 2,921,276 yejK Position (kb) 2918 2919 2920Strain fitness (log2 ratio) -2 -1 0 1at 2917.198 kb on + strand, within yejOat 2917.238 kb on + strand, within yejOat 2917.238 kb on + strand, within yejOat 2917.238 kb on + strand, within yejOat 2917.238 kb on + strand, within yejOat 2917.238 kb on + strand, within yejOat 2917.238 kb on + strand, within yejOat 2917.238 kb on + strand, within yejOat 2917.254 kb on - strand, within yejOat 2917.254 kb on - strand, within yejOat 2917.283 kb on + strand, within yejOat 2917.283 kb on + strand, within yejOat 2917.283 kb on + strand, within yejOat 2917.283 kb on + strand, within yejOat 2917.283 kb on + strand, within yejOat 2917.367 kb on + strand, within yejOat 2917.372 kb on + strandat 2917.372 kb on + strandat 2917.372 kb on + strandat 2917.375 kb on + strandat 2917.435 kb on + strandat 2917.435 kb on + strandat 2917.442 kb on + strandat 2917.442 kb on + strandat 2917.442 kb on + strandat 2917.481 kb on + strandat 2917.626 kb on - strandat 2917.651 kb on + strandat 2917.760 kb on + strandat 2917.760 kb on + strandat 2917.796 kb on - strandat 2917.903 kb on - strandat 2917.998 kb on - strandat 2917.998 kb on - strandat 2918.019 kb on - strandat 2918.019 kb on - strandat 2918.021 kb on + strandat 2918.022 kb on - strandat 2918.022 kb on - strandat 2918.022 kb on - strandat 2918.049 kb on + strandat 2918.168 kb on - strandat 2918.226 kb on + strandat 2918.227 kb on - strandat 2918.227 kb on - strandat 2918.515 kb on - strand, within yejMat 2918.671 kb on - strand, within yejMat 2918.852 kb on - strand, within yejMat 2918.891 kb on + strand, within yejMat 2918.892 kb on - strand, within yejMat 2918.910 kb on - strand, within yejMat 2919.130 kb on - strand, within yejMat 2920.123 kb on - strandat 2920.123 kb on - strandat 2920.123 kb on - strandat 2920.123 kb on - strandat 2920.131 kb on - strandat 2920.210 kb on + strandat 2920.254 kb on - strandat 2920.308 kb on - strandat 2920.308 kb on - strandat 2920.408 kb on - strand, within yejKat 2920.410 kb on - strand, within yejKat 2920.474 kb on + strand, within yejKat 2920.474 kb on + strand, within yejKat 2920.508 kb on + strand, within yejKat 2920.508 kb on + strand, within yejKat 2920.551 kb on + strand, within yejKat 2920.646 kb on + strand, within yejKat 2920.646 kb on + strand, within yejKat 2920.695 kb on - strand, within yejKat 2920.709 kb on + strand, within yejK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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2,917,198 + yejO NOLOHH_14900 0.83 +1.1
2,917,238 + yejO NOLOHH_14900 0.84 -0.2
2,917,238 + yejO NOLOHH_14900 0.84 -1.4
2,917,238 + yejO NOLOHH_14900 0.84 +0.4
2,917,238 + yejO NOLOHH_14900 0.84 -0.9
2,917,238 + yejO NOLOHH_14900 0.84 +0.0
2,917,238 + yejO NOLOHH_14900 0.84 -0.1
2,917,238 + yejO NOLOHH_14900 0.84 +0.7
2,917,254 - yejO NOLOHH_14900 0.85 -0.0
2,917,254 - yejO NOLOHH_14900 0.85 +0.1
2,917,283 + yejO NOLOHH_14900 0.86 +0.3
2,917,283 + yejO NOLOHH_14900 0.86 -0.3
2,917,283 + yejO NOLOHH_14900 0.86 -0.5
2,917,283 + yejO NOLOHH_14900 0.86 -1.3
2,917,283 + yejO NOLOHH_14900 0.86 +0.3
2,917,367 + yejO NOLOHH_14900 0.90 +0.2
2,917,372 + +0.1
2,917,372 + +0.4
2,917,372 + -1.5
2,917,375 + +0.8
2,917,435 + +0.5
2,917,435 + +0.4
2,917,442 + +0.6
2,917,442 + +0.4
2,917,442 + -0.7
2,917,481 + -0.6
2,917,626 - -0.2
2,917,651 + -0.1
2,917,760 + +1.3
2,917,760 + -0.6
2,917,796 - +0.2
2,917,903 - +0.4
2,917,998 - -0.2
2,917,998 - +0.1
2,918,019 - +1.3
2,918,019 - +0.5
2,918,021 + -2.1
2,918,022 - -0.0
2,918,022 - -0.4
2,918,022 - -0.2
2,918,049 + +0.8
2,918,168 - +0.6
2,918,226 + +1.6
2,918,227 - -0.6
2,918,227 - -0.6
2,918,515 - yejM NOLOHH_14910 0.25 -1.6
2,918,671 - yejM NOLOHH_14910 0.34 -0.8
2,918,852 - yejM NOLOHH_14910 0.44 +0.1
2,918,891 + yejM NOLOHH_14910 0.46 -2.7
2,918,892 - yejM NOLOHH_14910 0.46 +0.9
2,918,910 - yejM NOLOHH_14910 0.47 -2.2
2,919,130 - yejM NOLOHH_14910 0.60 -0.7
2,920,123 - -0.6
2,920,123 - -0.5
2,920,123 - +0.1
2,920,123 - -0.6
2,920,131 - +1.3
2,920,210 + +0.3
2,920,254 - -0.3
2,920,308 - -0.1
2,920,308 - +0.0
2,920,408 - yejK NOLOHH_14920 0.14 -0.4
2,920,410 - yejK NOLOHH_14920 0.14 -0.3
2,920,474 + yejK NOLOHH_14920 0.20 -0.1
2,920,474 + yejK NOLOHH_14920 0.20 +0.2
2,920,508 + yejK NOLOHH_14920 0.24 -2.5
2,920,508 + yejK NOLOHH_14920 0.24 -1.9
2,920,551 + yejK NOLOHH_14920 0.28 -0.5
2,920,646 + yejK NOLOHH_14920 0.37 -0.4
2,920,646 + yejK NOLOHH_14920 0.37 +0.9
2,920,695 - yejK NOLOHH_14920 0.42 +0.2
2,920,709 + yejK NOLOHH_14920 0.44 +0.3

Or see this region's nucleotide sequence