Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14515

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnuoL and nuoM are separated by 163 nucleotidesnuoM and nuoN are separated by 6 nucleotides NOLOHH_14510: nuoL - NADH-quinone oxidoreductase subunit L, at 2,826,958 to 2,828,799 nuoL NOLOHH_14515: nuoM - NADH-quinone oxidoreductase subunit M, at 2,828,963 to 2,830,492 nuoM NOLOHH_14520: nuoN - NADH-quinone oxidoreductase subunit NuoN, at 2,830,499 to 2,831,956 nuoN Position (kb) 2828 2829 2830 2831Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2828.084 kb on - strand, within nuoLat 2828.084 kb on - strand, within nuoLat 2828.152 kb on - strand, within nuoLat 2828.505 kb on + strand, within nuoLat 2828.505 kb on + strand, within nuoLat 2828.506 kb on - strand, within nuoLat 2828.564 kb on - strand, within nuoLat 2828.711 kb on + strandat 2828.737 kb on + strandat 2828.789 kb on + strandat 2828.789 kb on + strandat 2828.829 kb on + strandat 2828.829 kb on + strandat 2828.829 kb on + strandat 2828.829 kb on + strandat 2828.829 kb on + strandat 2828.830 kb on - strandat 2828.831 kb on + strandat 2828.831 kb on + strandat 2828.831 kb on + strandat 2828.831 kb on + strandat 2828.831 kb on + strandat 2828.831 kb on + strandat 2828.832 kb on - strandat 2828.832 kb on - strandat 2828.832 kb on - strandat 2828.832 kb on - strandat 2828.832 kb on - strandat 2828.832 kb on - strandat 2828.832 kb on - strandat 2828.832 kb on - strandat 2828.839 kb on + strandat 2828.943 kb on + strandat 2828.944 kb on - strandat 2828.985 kb on + strandat 2829.116 kb on + strand, within nuoMat 2829.197 kb on - strand, within nuoMat 2829.270 kb on + strand, within nuoMat 2829.270 kb on + strand, within nuoMat 2829.270 kb on + strand, within nuoMat 2829.271 kb on - strand, within nuoMat 2829.271 kb on - strand, within nuoMat 2829.271 kb on - strand, within nuoMat 2829.413 kb on + strand, within nuoMat 2829.491 kb on + strand, within nuoMat 2829.551 kb on + strand, within nuoMat 2829.552 kb on - strand, within nuoMat 2829.624 kb on - strand, within nuoMat 2829.832 kb on + strand, within nuoMat 2829.832 kb on + strand, within nuoMat 2829.833 kb on - strand, within nuoMat 2829.833 kb on - strand, within nuoMat 2829.860 kb on + strand, within nuoMat 2829.912 kb on - strand, within nuoMat 2829.950 kb on - strand, within nuoMat 2830.030 kb on + strand, within nuoMat 2830.186 kb on + strand, within nuoMat 2830.186 kb on + strand, within nuoMat 2830.361 kb on - strandat 2830.403 kb on + strandat 2830.465 kb on + strandat 2830.477 kb on + strandat 2830.478 kb on - strandat 2830.478 kb on - strandat 2830.480 kb on + strandat 2830.480 kb on + strandat 2830.480 kb on + strandat 2830.481 kb on - strandat 2830.490 kb on + strandat 2830.724 kb on + strand, within nuoNat 2830.724 kb on + strand, within nuoNat 2830.791 kb on - strand, within nuoNat 2830.815 kb on - strand, within nuoNat 2830.827 kb on + strand, within nuoNat 2830.827 kb on + strand, within nuoNat 2830.973 kb on + strand, within nuoNat 2831.030 kb on + strand, within nuoNat 2831.030 kb on + strand, within nuoNat 2831.031 kb on - strand, within nuoNat 2831.187 kb on + strand, within nuoNat 2831.187 kb on + strand, within nuoNat 2831.187 kb on + strand, within nuoNat 2831.313 kb on + strand, within nuoNat 2831.313 kb on + strand, within nuoNat 2831.314 kb on - strand, within nuoNat 2831.404 kb on + strand, within nuoNat 2831.484 kb on - strand, within nuoN

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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2,828,084 - nuoL NOLOHH_14510 0.61 +1.4
2,828,084 - nuoL NOLOHH_14510 0.61 -3.8
2,828,152 - nuoL NOLOHH_14510 0.65 -1.5
2,828,505 + nuoL NOLOHH_14510 0.84 +1.8
2,828,505 + nuoL NOLOHH_14510 0.84 -1.1
2,828,506 - nuoL NOLOHH_14510 0.84 -1.6
2,828,564 - nuoL NOLOHH_14510 0.87 -1.7
2,828,711 + +0.0
2,828,737 + -0.2
2,828,789 + -1.2
2,828,789 + -1.0
2,828,829 + -4.1
2,828,829 + -1.1
2,828,829 + +0.5
2,828,829 + -0.2
2,828,829 + -2.6
2,828,830 - -0.5
2,828,831 + -2.1
2,828,831 + -2.7
2,828,831 + -0.3
2,828,831 + +0.2
2,828,831 + -1.1
2,828,831 + -0.5
2,828,832 - -0.5
2,828,832 - -0.6
2,828,832 - -0.8
2,828,832 - -1.1
2,828,832 - -0.2
2,828,832 - -0.3
2,828,832 - -2.3
2,828,832 - -1.5
2,828,839 + -0.3
2,828,943 + -1.4
2,828,944 - -1.2
2,828,985 + -1.5
2,829,116 + nuoM NOLOHH_14515 0.10 -2.4
2,829,197 - nuoM NOLOHH_14515 0.15 -2.9
2,829,270 + nuoM NOLOHH_14515 0.20 -0.5
2,829,270 + nuoM NOLOHH_14515 0.20 -0.5
2,829,270 + nuoM NOLOHH_14515 0.20 -1.1
2,829,271 - nuoM NOLOHH_14515 0.20 -1.7
2,829,271 - nuoM NOLOHH_14515 0.20 +0.4
2,829,271 - nuoM NOLOHH_14515 0.20 +1.7
2,829,413 + nuoM NOLOHH_14515 0.29 -2.3
2,829,491 + nuoM NOLOHH_14515 0.35 -1.2
2,829,551 + nuoM NOLOHH_14515 0.38 -3.3
2,829,552 - nuoM NOLOHH_14515 0.38 -1.0
2,829,624 - nuoM NOLOHH_14515 0.43 -0.8
2,829,832 + nuoM NOLOHH_14515 0.57 -0.3
2,829,832 + nuoM NOLOHH_14515 0.57 -1.8
2,829,833 - nuoM NOLOHH_14515 0.57 -0.8
2,829,833 - nuoM NOLOHH_14515 0.57 -2.1
2,829,860 + nuoM NOLOHH_14515 0.59 +0.2
2,829,912 - nuoM NOLOHH_14515 0.62 -1.2
2,829,950 - nuoM NOLOHH_14515 0.65 -2.3
2,830,030 + nuoM NOLOHH_14515 0.70 -1.2
2,830,186 + nuoM NOLOHH_14515 0.80 -0.4
2,830,186 + nuoM NOLOHH_14515 0.80 -0.6
2,830,361 - +0.4
2,830,403 + -2.2
2,830,465 + -0.7
2,830,477 + -0.5
2,830,478 - -1.0
2,830,478 - +0.0
2,830,480 + -2.3
2,830,480 + -1.5
2,830,480 + -1.0
2,830,481 - -2.5
2,830,490 + -1.4
2,830,724 + nuoN NOLOHH_14520 0.15 -2.2
2,830,724 + nuoN NOLOHH_14520 0.15 -2.9
2,830,791 - nuoN NOLOHH_14520 0.20 -0.8
2,830,815 - nuoN NOLOHH_14520 0.22 -0.2
2,830,827 + nuoN NOLOHH_14520 0.22 -0.6
2,830,827 + nuoN NOLOHH_14520 0.22 +0.3
2,830,973 + nuoN NOLOHH_14520 0.33 -2.5
2,831,030 + nuoN NOLOHH_14520 0.36 -1.2
2,831,030 + nuoN NOLOHH_14520 0.36 -1.7
2,831,031 - nuoN NOLOHH_14520 0.36 +0.8
2,831,187 + nuoN NOLOHH_14520 0.47 -1.7
2,831,187 + nuoN NOLOHH_14520 0.47 +0.3
2,831,187 + nuoN NOLOHH_14520 0.47 -2.2
2,831,313 + nuoN NOLOHH_14520 0.56 -1.0
2,831,313 + nuoN NOLOHH_14520 0.56 -0.3
2,831,314 - nuoN NOLOHH_14520 0.56 +0.7
2,831,404 + nuoN NOLOHH_14520 0.62 -3.3
2,831,484 - nuoN NOLOHH_14520 0.68 -0.2

Or see this region's nucleotide sequence