Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14485

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnuoF and nuoG are separated by 52 nucleotidesnuoG and nuoH overlap by 4 nucleotidesnuoH and nuoI are separated by 14 nucleotides NOLOHH_14480: nuoF - NADH-quinone oxidoreductase subunit NuoF, at 2,820,449 to 2,821,786 nuoF NOLOHH_14485: nuoG - NADH-quinone oxidoreductase subunit NuoG, at 2,821,839 to 2,824,565 nuoG NOLOHH_14490: nuoH - NADH-quinone oxidoreductase subunit NuoH, at 2,824,562 to 2,825,539 nuoH NOLOHH_14495: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 2,825,554 to 2,826,096 nuoI Position (kb) 2821 2822 2823 2824 2825Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2820.855 kb on - strand, within nuoFat 2820.870 kb on + strand, within nuoFat 2820.928 kb on + strand, within nuoFat 2820.980 kb on + strand, within nuoFat 2821.074 kb on + strand, within nuoFat 2821.075 kb on - strand, within nuoFat 2821.118 kb on - strand, within nuoFat 2821.174 kb on + strand, within nuoFat 2821.174 kb on + strand, within nuoFat 2821.249 kb on + strand, within nuoFat 2821.277 kb on + strand, within nuoFat 2821.288 kb on + strand, within nuoFat 2821.688 kb on + strandat 2821.838 kb on - strandat 2821.870 kb on - strandat 2821.925 kb on + strandat 2821.932 kb on + strandat 2821.932 kb on + strandat 2822.066 kb on + strandat 2822.067 kb on - strandat 2822.153 kb on - strand, within nuoGat 2822.356 kb on - strand, within nuoGat 2822.376 kb on + strand, within nuoGat 2822.376 kb on + strand, within nuoGat 2822.376 kb on + strand, within nuoGat 2822.482 kb on - strand, within nuoGat 2822.489 kb on + strand, within nuoGat 2822.490 kb on - strand, within nuoGat 2822.490 kb on - strand, within nuoGat 2822.686 kb on + strand, within nuoGat 2822.750 kb on + strand, within nuoGat 2822.751 kb on - strand, within nuoGat 2822.922 kb on + strand, within nuoGat 2822.922 kb on + strand, within nuoGat 2822.923 kb on - strand, within nuoGat 2822.923 kb on - strand, within nuoGat 2822.923 kb on - strand, within nuoGat 2822.952 kb on + strand, within nuoGat 2823.162 kb on - strand, within nuoGat 2823.358 kb on + strand, within nuoGat 2823.753 kb on + strand, within nuoGat 2823.753 kb on + strand, within nuoGat 2823.754 kb on - strand, within nuoGat 2824.058 kb on + strand, within nuoGat 2824.059 kb on - strand, within nuoGat 2824.221 kb on + strand, within nuoGat 2824.221 kb on + strand, within nuoGat 2824.281 kb on + strand, within nuoGat 2824.282 kb on - strand, within nuoGat 2824.284 kb on + strand, within nuoGat 2824.341 kb on - strandat 2824.353 kb on + strandat 2824.354 kb on - strandat 2824.354 kb on - strandat 2824.403 kb on + strandat 2824.418 kb on + strandat 2824.418 kb on + strandat 2824.422 kb on + strandat 2824.982 kb on + strand, within nuoHat 2824.982 kb on + strand, within nuoHat 2824.982 kb on + strand, within nuoHat 2824.982 kb on + strand, within nuoHat 2824.983 kb on - strand, within nuoHat 2825.149 kb on + strand, within nuoHat 2825.150 kb on - strand, within nuoHat 2825.178 kb on + strand, within nuoHat 2825.246 kb on + strand, within nuoHat 2825.285 kb on + strand, within nuoHat 2825.286 kb on - strand, within nuoHat 2825.395 kb on + strand, within nuoHat 2825.451 kb on + strandat 2825.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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2,820,855 - nuoF NOLOHH_14480 0.30 -2.4
2,820,870 + nuoF NOLOHH_14480 0.31 +0.7
2,820,928 + nuoF NOLOHH_14480 0.36 -0.7
2,820,980 + nuoF NOLOHH_14480 0.40 -1.1
2,821,074 + nuoF NOLOHH_14480 0.47 -1.3
2,821,075 - nuoF NOLOHH_14480 0.47 -0.7
2,821,118 - nuoF NOLOHH_14480 0.50 -1.5
2,821,174 + nuoF NOLOHH_14480 0.54 -1.2
2,821,174 + nuoF NOLOHH_14480 0.54 -0.8
2,821,249 + nuoF NOLOHH_14480 0.60 -0.3
2,821,277 + nuoF NOLOHH_14480 0.62 -1.1
2,821,288 + nuoF NOLOHH_14480 0.63 -2.8
2,821,688 + -3.2
2,821,838 - -4.0
2,821,870 - -1.5
2,821,925 + -1.8
2,821,932 + -1.1
2,821,932 + -0.6
2,822,066 + -2.6
2,822,067 - +2.0
2,822,153 - nuoG NOLOHH_14485 0.12 -2.9
2,822,356 - nuoG NOLOHH_14485 0.19 -0.8
2,822,376 + nuoG NOLOHH_14485 0.20 -0.8
2,822,376 + nuoG NOLOHH_14485 0.20 -1.9
2,822,376 + nuoG NOLOHH_14485 0.20 +1.6
2,822,482 - nuoG NOLOHH_14485 0.24 -0.9
2,822,489 + nuoG NOLOHH_14485 0.24 -2.5
2,822,490 - nuoG NOLOHH_14485 0.24 -2.0
2,822,490 - nuoG NOLOHH_14485 0.24 -1.6
2,822,686 + nuoG NOLOHH_14485 0.31 -0.6
2,822,750 + nuoG NOLOHH_14485 0.33 -0.5
2,822,751 - nuoG NOLOHH_14485 0.33 -1.9
2,822,922 + nuoG NOLOHH_14485 0.40 -1.5
2,822,922 + nuoG NOLOHH_14485 0.40 -0.6
2,822,923 - nuoG NOLOHH_14485 0.40 -2.7
2,822,923 - nuoG NOLOHH_14485 0.40 -1.2
2,822,923 - nuoG NOLOHH_14485 0.40 -1.6
2,822,952 + nuoG NOLOHH_14485 0.41 -2.9
2,823,162 - nuoG NOLOHH_14485 0.49 -1.2
2,823,358 + nuoG NOLOHH_14485 0.56 -1.8
2,823,753 + nuoG NOLOHH_14485 0.70 -2.3
2,823,753 + nuoG NOLOHH_14485 0.70 -1.8
2,823,754 - nuoG NOLOHH_14485 0.70 -1.0
2,824,058 + nuoG NOLOHH_14485 0.81 -0.9
2,824,059 - nuoG NOLOHH_14485 0.81 -1.3
2,824,221 + nuoG NOLOHH_14485 0.87 -0.9
2,824,221 + nuoG NOLOHH_14485 0.87 +1.2
2,824,281 + nuoG NOLOHH_14485 0.90 -2.2
2,824,282 - nuoG NOLOHH_14485 0.90 -3.1
2,824,284 + nuoG NOLOHH_14485 0.90 -0.5
2,824,341 - -1.8
2,824,353 + -2.6
2,824,354 - -0.3
2,824,354 - -1.3
2,824,403 + -2.9
2,824,418 + -0.4
2,824,418 + -0.3
2,824,422 + -3.2
2,824,982 + nuoH NOLOHH_14490 0.43 -1.6
2,824,982 + nuoH NOLOHH_14490 0.43 -1.6
2,824,982 + nuoH NOLOHH_14490 0.43 -1.2
2,824,982 + nuoH NOLOHH_14490 0.43 -2.1
2,824,983 - nuoH NOLOHH_14490 0.43 -3.2
2,825,149 + nuoH NOLOHH_14490 0.60 -2.2
2,825,150 - nuoH NOLOHH_14490 0.60 -1.9
2,825,178 + nuoH NOLOHH_14490 0.63 -2.9
2,825,246 + nuoH NOLOHH_14490 0.70 -2.2
2,825,285 + nuoH NOLOHH_14490 0.74 -1.1
2,825,286 - nuoH NOLOHH_14490 0.74 -1.7
2,825,395 + nuoH NOLOHH_14490 0.85 -0.7
2,825,451 + -1.1
2,825,561 + -1.1

Or see this region's nucleotide sequence