Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13435

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfgH and yfgG are separated by 313 nucleotidesyfgG and NOLOHH_13435 are separated by 35 nucleotidesNOLOHH_13435 and pdeF are separated by 181 nucleotides NOLOHH_13425: yfgH - Uncharacterized lipoprotein YfgH, at 2,607,647 to 2,608,162 yfgH NOLOHH_13430: yfgG - Uncharacterized protein YfgG, at 2,608,476 to 2,608,649 yfgG NOLOHH_13435: NOLOHH_13435 - hypothetical protein, at 2,608,685 to 2,608,837 _13435 NOLOHH_13440: pdeF - cyclic-guanylate-specific phosphodiesterase PdeF, at 2,609,019 to 2,611,262 pdeF Position (kb) 2608 2609Strain fitness (log2 ratio) -2 -1 0 1at 2607.720 kb on - strand, within yfgHat 2607.764 kb on - strand, within yfgHat 2607.764 kb on - strand, within yfgHat 2607.764 kb on - strand, within yfgHat 2607.765 kb on + strand, within yfgHat 2607.765 kb on + strand, within yfgHat 2607.766 kb on - strand, within yfgHat 2607.766 kb on - strand, within yfgHat 2607.766 kb on - strand, within yfgHat 2607.785 kb on - strand, within yfgHat 2607.785 kb on - strand, within yfgHat 2607.785 kb on - strand, within yfgHat 2607.785 kb on - strand, within yfgHat 2607.830 kb on - strand, within yfgHat 2607.830 kb on - strand, within yfgHat 2608.590 kb on - strand, within yfgGat 2608.590 kb on - strand, within yfgGat 2608.685 kb on - strandat 2608.710 kb on - strand, within NOLOHH_13435at 2608.882 kb on + strandat 2608.913 kb on + strandat 2609.018 kb on + strandat 2609.115 kb on - strandat 2609.390 kb on + strand, within pdeFat 2609.390 kb on + strand, within pdeFat 2609.393 kb on - strand, within pdeFat 2609.455 kb on + strand, within pdeFat 2609.523 kb on + strand, within pdeFat 2609.569 kb on - strand, within pdeFat 2609.695 kb on + strand, within pdeFat 2609.751 kb on + strand, within pdeFat 2609.752 kb on - strand, within pdeFat 2609.752 kb on - strand, within pdeFat 2609.753 kb on + strand, within pdeFat 2609.805 kb on + strand, within pdeFat 2609.807 kb on + strand, within pdeF

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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2,607,720 - yfgH NOLOHH_13425 0.14 +0.8
2,607,764 - yfgH NOLOHH_13425 0.23 +1.1
2,607,764 - yfgH NOLOHH_13425 0.23 -0.5
2,607,764 - yfgH NOLOHH_13425 0.23 +0.1
2,607,765 + yfgH NOLOHH_13425 0.23 +1.6
2,607,765 + yfgH NOLOHH_13425 0.23 -1.9
2,607,766 - yfgH NOLOHH_13425 0.23 +0.9
2,607,766 - yfgH NOLOHH_13425 0.23 +0.0
2,607,766 - yfgH NOLOHH_13425 0.23 +0.5
2,607,785 - yfgH NOLOHH_13425 0.27 -0.1
2,607,785 - yfgH NOLOHH_13425 0.27 +0.3
2,607,785 - yfgH NOLOHH_13425 0.27 -1.8
2,607,785 - yfgH NOLOHH_13425 0.27 +0.1
2,607,830 - yfgH NOLOHH_13425 0.35 +0.9
2,607,830 - yfgH NOLOHH_13425 0.35 -0.3
2,608,590 - yfgG NOLOHH_13430 0.66 +0.2
2,608,590 - yfgG NOLOHH_13430 0.66 -0.8
2,608,685 - -0.8
2,608,710 - NOLOHH_13435 0.16 -1.2
2,608,882 + +0.1
2,608,913 + -0.1
2,609,018 + +0.8
2,609,115 - -0.4
2,609,390 + pdeF NOLOHH_13440 0.17 -0.3
2,609,390 + pdeF NOLOHH_13440 0.17 -1.7
2,609,393 - pdeF NOLOHH_13440 0.17 -1.0
2,609,455 + pdeF NOLOHH_13440 0.19 -1.1
2,609,523 + pdeF NOLOHH_13440 0.22 +0.2
2,609,569 - pdeF NOLOHH_13440 0.25 +1.5
2,609,695 + pdeF NOLOHH_13440 0.30 -0.3
2,609,751 + pdeF NOLOHH_13440 0.33 -2.5
2,609,752 - pdeF NOLOHH_13440 0.33 +0.6
2,609,752 - pdeF NOLOHH_13440 0.33 +0.0
2,609,753 + pdeF NOLOHH_13440 0.33 +0.6
2,609,805 + pdeF NOLOHH_13440 0.35 -0.4
2,609,807 + pdeF NOLOHH_13440 0.35 -0.4

Or see this region's nucleotide sequence