Strain Fitness in Escherichia coli ECOR27 around NOLOHH_04075

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvalS and yjgN are separated by 55 nucleotidesyjgN and yjgM are separated by 192 nucleotidesyjgM and rraB are separated by 45 nucleotides NOLOHH_04070: valS - valine--tRNA ligase, at 734,471 to 737,326 valS NOLOHH_04075: yjgN - Inner membrane protein YjgN, at 737,382 to 738,578 yjgN NOLOHH_04080: yjgM - Uncharacterized N-acetyltransferase YjgM, at 738,771 to 739,274 yjgM NOLOHH_04085: rraB - ribonuclease E inhibitor RraB, at 739,320 to 739,736 rraB Position (kb) 737 738 739Strain fitness (log2 ratio) -3 -2 -1 0 1at 737.377 kb on - strandat 737.406 kb on - strandat 737.842 kb on + strand, within yjgNat 737.982 kb on - strand, within yjgNat 738.048 kb on - strand, within yjgNat 738.048 kb on - strand, within yjgNat 738.050 kb on + strand, within yjgNat 738.429 kb on - strand, within yjgNat 738.455 kb on - strand, within yjgNat 738.696 kb on + strandat 738.800 kb on - strandat 738.924 kb on + strand, within yjgMat 738.925 kb on - strand, within yjgMat 738.925 kb on - strand, within yjgMat 738.933 kb on + strand, within yjgMat 738.933 kb on + strand, within yjgMat 738.933 kb on + strand, within yjgMat 738.933 kb on + strand, within yjgMat 738.933 kb on + strand, within yjgMat 738.933 kb on + strand, within yjgMat 738.933 kb on + strand, within yjgMat 738.933 kb on + strand, within yjgMat 738.934 kb on - strand, within yjgMat 738.934 kb on - strand, within yjgMat 738.936 kb on - strand, within yjgMat 738.970 kb on - strand, within yjgMat 738.970 kb on - strand, within yjgMat 739.050 kb on + strand, within yjgMat 739.050 kb on + strand, within yjgMat 739.050 kb on + strand, within yjgMat 739.143 kb on + strand, within yjgMat 739.208 kb on + strand, within yjgMat 739.209 kb on - strand, within yjgMat 739.240 kb on + strandat 739.240 kb on + strandat 739.240 kb on + strandat 739.241 kb on - strandat 739.241 kb on - strandat 739.241 kb on - strandat 739.310 kb on - strandat 739.310 kb on - strandat 739.318 kb on - strandat 739.321 kb on + strandat 739.396 kb on + strand, within rraBat 739.396 kb on + strand, within rraBat 739.397 kb on - strand, within rraBat 739.415 kb on - strand, within rraB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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737,377 - +0.1
737,406 - -2.8
737,842 + yjgN NOLOHH_04075 0.38 -1.2
737,982 - yjgN NOLOHH_04075 0.50 -1.3
738,048 - yjgN NOLOHH_04075 0.56 -0.4
738,048 - yjgN NOLOHH_04075 0.56 -1.0
738,050 + yjgN NOLOHH_04075 0.56 -0.3
738,429 - yjgN NOLOHH_04075 0.87 +0.2
738,455 - yjgN NOLOHH_04075 0.90 -3.0
738,696 + -0.2
738,800 - +0.4
738,924 + yjgM NOLOHH_04080 0.30 +0.3
738,925 - yjgM NOLOHH_04080 0.31 -0.2
738,925 - yjgM NOLOHH_04080 0.31 +0.0
738,933 + yjgM NOLOHH_04080 0.32 +0.8
738,933 + yjgM NOLOHH_04080 0.32 +0.6
738,933 + yjgM NOLOHH_04080 0.32 -0.2
738,933 + yjgM NOLOHH_04080 0.32 +0.1
738,933 + yjgM NOLOHH_04080 0.32 +0.1
738,933 + yjgM NOLOHH_04080 0.32 +0.2
738,933 + yjgM NOLOHH_04080 0.32 -0.6
738,933 + yjgM NOLOHH_04080 0.32 +0.5
738,934 - yjgM NOLOHH_04080 0.32 -1.0
738,934 - yjgM NOLOHH_04080 0.32 -0.1
738,936 - yjgM NOLOHH_04080 0.33 +0.3
738,970 - yjgM NOLOHH_04080 0.39 -0.3
738,970 - yjgM NOLOHH_04080 0.39 -1.2
739,050 + yjgM NOLOHH_04080 0.55 -0.2
739,050 + yjgM NOLOHH_04080 0.55 +0.3
739,050 + yjgM NOLOHH_04080 0.55 +0.8
739,143 + yjgM NOLOHH_04080 0.74 -0.1
739,208 + yjgM NOLOHH_04080 0.87 -0.2
739,209 - yjgM NOLOHH_04080 0.87 -1.0
739,240 + +0.3
739,240 + -0.7
739,240 + -0.5
739,241 - -0.5
739,241 - -0.6
739,241 - +0.2
739,310 - +0.6
739,310 - +0.7
739,318 - -0.0
739,321 + +0.5
739,396 + rraB NOLOHH_04085 0.18 +1.6
739,396 + rraB NOLOHH_04085 0.18 +0.6
739,397 - rraB NOLOHH_04085 0.18 -2.8
739,415 - rraB NOLOHH_04085 0.23 +1.0

Or see this region's nucleotide sequence