Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimB and Leu_trna are separated by 199 nucleotides Leu_trna and ahr are separated by 195 nucleotides
NOLOHH_04000: fimB - integrase, at 720,425 to 721,684
fimB
NOLOHH_04005: Leu_trna - tRNA-Leu(caa), at 721,884 to 721,968
_trna
NOLOHH_04010: ahr - NADPH-dependent aldehyde reductase Ahr, at 722,164 to 723,183
ahr
Position (kb) 721
722 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 720.916 kb on + strand, within fimB at 720.916 kb on + strand, within fimB at 721.019 kb on - strand, within fimB at 721.046 kb on + strand, within fimB at 721.046 kb on + strand, within fimB at 721.046 kb on + strand, within fimB at 721.046 kb on + strand, within fimB at 721.047 kb on - strand, within fimB at 721.047 kb on - strand, within fimB at 721.057 kb on + strand, within fimB at 721.057 kb on + strand, within fimB at 721.057 kb on + strand, within fimB at 721.057 kb on + strand, within fimB at 721.058 kb on - strand, within fimB at 721.058 kb on - strand, within fimB at 721.058 kb on - strand, within fimB at 721.063 kb on + strand, within fimB at 721.132 kb on + strand, within fimB at 721.133 kb on - strand, within fimB at 721.133 kb on - strand, within fimB at 721.133 kb on - strand, within fimB at 721.134 kb on + strand, within fimB at 721.134 kb on + strand, within fimB at 721.135 kb on - strand, within fimB at 721.142 kb on + strand, within fimB at 721.143 kb on - strand, within fimB at 721.159 kb on + strand, within fimB at 721.160 kb on - strand, within fimB at 721.160 kb on - strand, within fimB at 721.168 kb on + strand, within fimB at 721.169 kb on - strand, within fimB at 721.171 kb on + strand, within fimB at 721.171 kb on + strand, within fimB at 721.172 kb on - strand, within fimB at 721.172 kb on - strand, within fimB at 721.172 kb on - strand, within fimB at 721.177 kb on + strand, within fimB at 721.177 kb on + strand, within fimB at 721.178 kb on - strand, within fimB at 721.180 kb on + strand, within fimB at 721.180 kb on + strand, within fimB at 721.180 kb on + strand, within fimB at 721.181 kb on - strand, within fimB at 721.282 kb on + strand, within fimB at 721.304 kb on - strand, within fimB at 721.383 kb on - strand, within fimB at 721.383 kb on - strand, within fimB at 721.415 kb on + strand, within fimB at 721.456 kb on + strand, within fimB at 721.457 kb on - strand, within fimB at 721.461 kb on - strand, within fimB at 721.461 kb on - strand, within fimB at 721.461 kb on - strand, within fimB at 721.461 kb on - strand, within fimB at 721.519 kb on - strand, within fimB at 721.546 kb on + strand, within fimB at 721.575 kb on + strand at 721.576 kb on - strand at 721.633 kb on - strand at 721.633 kb on - strand at 721.692 kb on - strand at 721.740 kb on + strand at 721.775 kb on - strand at 721.794 kb on + strand at 721.794 kb on + strand at 721.794 kb on + strand at 721.794 kb on + strand at 721.871 kb on - strand at 721.875 kb on - strand at 721.875 kb on - strand at 721.879 kb on - strand at 721.916 kb on - strand, within Leu_trna at 721.916 kb on - strand, within Leu_trna at 721.980 kb on - strand at 721.980 kb on - strand at 722.003 kb on - strand at 722.050 kb on - strand at 722.075 kb on + strand at 722.088 kb on - strand at 722.128 kb on + strand at 722.129 kb on - strand at 722.129 kb on - strand at 722.174 kb on + strand at 722.182 kb on + strand at 722.183 kb on - strand at 722.183 kb on - strand at 722.183 kb on - strand at 722.218 kb on + strand at 722.224 kb on + strand at 722.224 kb on + strand at 722.332 kb on + strand, within ahr at 722.469 kb on + strand, within ahr at 722.469 kb on + strand, within ahr at 722.469 kb on + strand, within ahr at 722.470 kb on - strand, within ahr at 722.470 kb on - strand, within ahr at 722.470 kb on - strand, within ahr at 722.517 kb on + strand, within ahr at 722.517 kb on + strand, within ahr at 722.637 kb on + strand, within ahr at 722.658 kb on + strand, within ahr at 722.658 kb on + strand, within ahr at 722.659 kb on - strand, within ahr at 722.659 kb on - strand, within ahr at 722.659 kb on - strand, within ahr at 722.684 kb on + strand, within ahr at 722.692 kb on - strand, within ahr at 722.717 kb on + strand, within ahr at 722.868 kb on + strand, within ahr at 722.874 kb on + strand, within ahr at 722.923 kb on + strand, within ahr
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 720,916 + fimB NOLOHH_04000 0.39 -2.8 720,916 + fimB NOLOHH_04000 0.39 +0.3 721,019 - fimB NOLOHH_04000 0.47 -0.1 721,046 + fimB NOLOHH_04000 0.49 +1.0 721,046 + fimB NOLOHH_04000 0.49 +0.1 721,046 + fimB NOLOHH_04000 0.49 -0.3 721,046 + fimB NOLOHH_04000 0.49 -1.2 721,047 - fimB NOLOHH_04000 0.49 -0.4 721,047 - fimB NOLOHH_04000 0.49 +0.5 721,057 + fimB NOLOHH_04000 0.50 +0.1 721,057 + fimB NOLOHH_04000 0.50 -0.5 721,057 + fimB NOLOHH_04000 0.50 -2.1 721,057 + fimB NOLOHH_04000 0.50 +1.1 721,058 - fimB NOLOHH_04000 0.50 +0.6 721,058 - fimB NOLOHH_04000 0.50 -0.7 721,058 - fimB NOLOHH_04000 0.50 -0.1 721,063 + fimB NOLOHH_04000 0.51 +0.9 721,132 + fimB NOLOHH_04000 0.56 +1.7 721,133 - fimB NOLOHH_04000 0.56 +0.9 721,133 - fimB NOLOHH_04000 0.56 +0.6 721,133 - fimB NOLOHH_04000 0.56 +0.7 721,134 + fimB NOLOHH_04000 0.56 -0.5 721,134 + fimB NOLOHH_04000 0.56 +1.3 721,135 - fimB NOLOHH_04000 0.56 +0.7 721,142 + fimB NOLOHH_04000 0.57 +1.0 721,143 - fimB NOLOHH_04000 0.57 -0.0 721,159 + fimB NOLOHH_04000 0.58 +0.3 721,160 - fimB NOLOHH_04000 0.58 -1.1 721,160 - fimB NOLOHH_04000 0.58 +0.9 721,168 + fimB NOLOHH_04000 0.59 +0.5 721,169 - fimB NOLOHH_04000 0.59 +0.5 721,171 + fimB NOLOHH_04000 0.59 +0.6 721,171 + fimB NOLOHH_04000 0.59 -0.4 721,172 - fimB NOLOHH_04000 0.59 +0.1 721,172 - fimB NOLOHH_04000 0.59 +0.4 721,172 - fimB NOLOHH_04000 0.59 -0.6 721,177 + fimB NOLOHH_04000 0.60 +0.8 721,177 + fimB NOLOHH_04000 0.60 -0.1 721,178 - fimB NOLOHH_04000 0.60 -0.7 721,180 + fimB NOLOHH_04000 0.60 -0.2 721,180 + fimB NOLOHH_04000 0.60 +0.8 721,180 + fimB NOLOHH_04000 0.60 +1.0 721,181 - fimB NOLOHH_04000 0.60 -0.7 721,282 + fimB NOLOHH_04000 0.68 +0.4 721,304 - fimB NOLOHH_04000 0.70 +1.2 721,383 - fimB NOLOHH_04000 0.76 +0.2 721,383 - fimB NOLOHH_04000 0.76 -0.7 721,415 + fimB NOLOHH_04000 0.79 -0.4 721,456 + fimB NOLOHH_04000 0.82 +0.9 721,457 - fimB NOLOHH_04000 0.82 -0.0 721,461 - fimB NOLOHH_04000 0.82 +0.8 721,461 - fimB NOLOHH_04000 0.82 +0.5 721,461 - fimB NOLOHH_04000 0.82 -0.3 721,461 - fimB NOLOHH_04000 0.82 +0.3 721,519 - fimB NOLOHH_04000 0.87 -0.3 721,546 + fimB NOLOHH_04000 0.89 -4.2 721,575 + -0.4 721,576 - +0.5 721,633 - +0.0 721,633 - -1.4 721,692 - +0.3 721,740 + +0.5 721,775 - +0.1 721,794 + +0.8 721,794 + +1.4 721,794 + +0.7 721,794 + +0.2 721,871 - +0.2 721,875 - +1.5 721,875 - +0.1 721,879 - +0.4 721,916 - Leu_trna NOLOHH_04005 0.38 -2.1 721,916 - Leu_trna NOLOHH_04005 0.38 -0.1 721,980 - -0.6 721,980 - -0.4 722,003 - +1.3 722,050 - -0.1 722,075 + -1.0 722,088 - +0.5 722,128 + +0.8 722,129 - -0.4 722,129 - -0.3 722,174 + +1.0 722,182 + +0.1 722,183 - +0.1 722,183 - +1.0 722,183 - -0.1 722,218 + -0.4 722,224 + +0.2 722,224 + +1.0 722,332 + ahr NOLOHH_04010 0.16 +0.9 722,469 + ahr NOLOHH_04010 0.30 -0.6 722,469 + ahr NOLOHH_04010 0.30 +0.5 722,469 + ahr NOLOHH_04010 0.30 -0.2 722,470 - ahr NOLOHH_04010 0.30 +0.4 722,470 - ahr NOLOHH_04010 0.30 +0.7 722,470 - ahr NOLOHH_04010 0.30 +0.1 722,517 + ahr NOLOHH_04010 0.35 +0.7 722,517 + ahr NOLOHH_04010 0.35 -0.2 722,637 + ahr NOLOHH_04010 0.46 -0.2 722,658 + ahr NOLOHH_04010 0.48 -0.8 722,658 + ahr NOLOHH_04010 0.48 +0.2 722,659 - ahr NOLOHH_04010 0.49 +0.4 722,659 - ahr NOLOHH_04010 0.49 -0.1 722,659 - ahr NOLOHH_04010 0.49 +0.2 722,684 + ahr NOLOHH_04010 0.51 -1.6 722,692 - ahr NOLOHH_04010 0.52 -1.1 722,717 + ahr NOLOHH_04010 0.54 +0.6 722,868 + ahr NOLOHH_04010 0.69 +0.1 722,874 + ahr NOLOHH_04010 0.70 -0.1 722,923 + ahr NOLOHH_04010 0.74 -0.5
Or see this region's nucleotide sequence