Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_03015 and rsmH overlap by 4 nucleotides rsmH and mraZ are separated by 1 nucleotides mraZ and cra are separated by 601 nucleotides
NOLOHH_03015: NOLOHH_03015 - penicillin-binding protein PBP3 FtsI, at 517,833 to 518,198
_03015
NOLOHH_03020: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 518,195 to 519,136
rsmH
NOLOHH_03025: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 519,138 to 519,596
mraZ
NOLOHH_03030: cra - catabolite repressor/activator, at 520,198 to 521,202
cra
Position (kb) 519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 518.396 kb on - strand, within rsmH at 518.396 kb on - strand, within rsmH at 518.481 kb on - strand, within rsmH at 518.756 kb on - strand, within rsmH at 519.169 kb on - strand at 519.201 kb on - strand, within mraZ at 519.364 kb on - strand, within mraZ at 519.455 kb on - strand, within mraZ at 519.577 kb on - strand at 519.702 kb on - strand at 519.739 kb on + strand at 519.740 kb on - strand at 519.745 kb on - strand at 519.745 kb on - strand at 519.768 kb on - strand at 519.774 kb on - strand at 519.780 kb on - strand at 519.846 kb on + strand at 519.848 kb on + strand at 519.849 kb on - strand at 519.880 kb on + strand at 519.887 kb on + strand at 519.887 kb on + strand at 519.887 kb on + strand at 519.887 kb on + strand at 519.888 kb on - strand at 519.888 kb on - strand at 519.888 kb on - strand at 519.888 kb on - strand at 519.972 kb on + strand at 520.034 kb on + strand at 520.034 kb on + strand at 520.038 kb on + strand at 520.039 kb on - strand at 520.063 kb on - strand at 520.063 kb on - strand at 520.089 kb on + strand at 520.095 kb on + strand at 520.098 kb on + strand at 520.114 kb on + strand at 520.114 kb on + strand at 520.114 kb on + strand at 520.115 kb on - strand at 520.118 kb on + strand at 520.119 kb on - strand at 520.130 kb on - strand at 520.199 kb on + strand at 520.199 kb on + strand at 520.200 kb on - strand at 520.233 kb on + strand at 520.234 kb on - strand at 520.234 kb on - strand at 520.234 kb on - strand at 520.357 kb on + strand, within cra at 520.358 kb on - strand, within cra at 520.358 kb on - strand, within cra at 520.429 kb on + strand, within cra at 520.429 kb on + strand, within cra at 520.544 kb on + strand, within cra at 520.544 kb on + strand, within cra at 520.544 kb on + strand, within cra at 520.545 kb on - strand, within cra at 520.545 kb on - strand, within cra
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 518,396 - rsmH NOLOHH_03020 0.21 +1.0 518,396 - rsmH NOLOHH_03020 0.21 +0.7 518,481 - rsmH NOLOHH_03020 0.30 -0.8 518,756 - rsmH NOLOHH_03020 0.60 +0.2 519,169 - +0.3 519,201 - mraZ NOLOHH_03025 0.14 -1.1 519,364 - mraZ NOLOHH_03025 0.49 -1.3 519,455 - mraZ NOLOHH_03025 0.69 +0.0 519,577 - +0.8 519,702 - +0.0 519,739 + -1.7 519,740 - +0.0 519,745 - +0.2 519,745 - -0.1 519,768 - +0.1 519,774 - +0.1 519,780 - -0.1 519,846 + -0.1 519,848 + -1.4 519,849 - +0.2 519,880 + +0.1 519,887 + -0.2 519,887 + -0.5 519,887 + +0.2 519,887 + -1.8 519,888 - -0.0 519,888 - -0.4 519,888 - -0.5 519,888 - +0.5 519,972 + +0.1 520,034 + -0.5 520,034 + +0.6 520,038 + +0.1 520,039 - +0.7 520,063 - -0.3 520,063 - -0.5 520,089 + -2.4 520,095 + -0.8 520,098 + +0.1 520,114 + +0.3 520,114 + -0.2 520,114 + -2.4 520,115 - -0.8 520,118 + +0.0 520,119 - -0.6 520,130 - -0.1 520,199 + -0.6 520,199 + -1.2 520,200 - -0.9 520,233 + -3.1 520,234 - -1.0 520,234 - -0.9 520,234 - -0.7 520,357 + cra NOLOHH_03030 0.16 +0.3 520,358 - cra NOLOHH_03030 0.16 +0.2 520,358 - cra NOLOHH_03030 0.16 +0.3 520,429 + cra NOLOHH_03030 0.23 -0.8 520,429 + cra NOLOHH_03030 0.23 -0.0 520,544 + cra NOLOHH_03030 0.34 -2.0 520,544 + cra NOLOHH_03030 0.34 -0.2 520,544 + cra NOLOHH_03030 0.34 -2.9 520,545 - cra NOLOHH_03030 0.35 -0.2 520,545 - cra NOLOHH_03030 0.35 +1.3
Or see this region's nucleotide sequence