Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thpR and sfsA are separated by 14 nucleotides sfsA and dksA are separated by 177 nucleotides dksA and gluQRS are separated by 36 nucleotides
NOLOHH_02680: thpR - RNA 2',3'-cyclic phosphodiesterase, at 447,519 to 448,049
thpR
NOLOHH_02685: sfsA - DNA/RNA nuclease SfsA, at 448,064 to 448,768
sfsA
NOLOHH_02690: dksA - RNA polymerase-binding protein DksA, at 448,946 to 449,401
dksA
NOLOHH_02695: gluQRS - tRNA glutamyl-Q(34) synthetase GluQRS, at 449,438 to 450,364
gluQRS
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 447.947 kb on + strand, within thpR at 447.957 kb on + strand, within thpR at 448.048 kb on - strand at 448.083 kb on + strand at 448.161 kb on + strand, within sfsA at 448.175 kb on - strand, within sfsA at 448.251 kb on - strand, within sfsA at 448.251 kb on - strand, within sfsA at 448.251 kb on - strand, within sfsA at 448.251 kb on - strand, within sfsA at 448.269 kb on + strand, within sfsA at 448.270 kb on - strand, within sfsA at 448.294 kb on + strand, within sfsA at 448.295 kb on - strand, within sfsA at 448.307 kb on - strand, within sfsA at 448.375 kb on + strand, within sfsA at 448.375 kb on + strand, within sfsA at 448.376 kb on - strand, within sfsA at 448.376 kb on - strand, within sfsA at 448.376 kb on - strand, within sfsA at 448.396 kb on - strand, within sfsA at 448.396 kb on - strand, within sfsA at 448.429 kb on + strand, within sfsA at 448.430 kb on - strand, within sfsA at 448.430 kb on - strand, within sfsA at 448.430 kb on - strand, within sfsA at 448.460 kb on + strand, within sfsA at 448.460 kb on + strand, within sfsA at 448.460 kb on + strand, within sfsA at 448.461 kb on - strand, within sfsA at 448.461 kb on - strand, within sfsA at 448.462 kb on + strand, within sfsA at 448.462 kb on + strand, within sfsA at 448.463 kb on - strand, within sfsA at 448.655 kb on + strand, within sfsA at 448.665 kb on + strand, within sfsA at 448.665 kb on + strand, within sfsA at 448.665 kb on + strand, within sfsA at 448.665 kb on + strand, within sfsA at 448.692 kb on + strand, within sfsA at 448.706 kb on + strand at 448.706 kb on + strand at 448.707 kb on - strand at 448.760 kb on - strand at 448.767 kb on - strand at 448.767 kb on - strand at 448.774 kb on + strand at 448.775 kb on - strand at 448.775 kb on - strand at 448.775 kb on - strand at 448.778 kb on + strand at 448.778 kb on + strand at 448.779 kb on - strand at 448.786 kb on + strand at 448.792 kb on - strand at 448.844 kb on + strand at 448.845 kb on - strand at 448.854 kb on + strand at 448.855 kb on - strand at 448.855 kb on - strand at 448.855 kb on - strand at 448.855 kb on - strand at 448.885 kb on - strand at 448.886 kb on + strand at 449.036 kb on + strand, within dksA at 449.036 kb on + strand, within dksA at 449.038 kb on + strand, within dksA at 449.038 kb on + strand, within dksA at 449.071 kb on + strand, within dksA at 449.128 kb on + strand, within dksA at 449.129 kb on - strand, within dksA at 449.129 kb on - strand, within dksA at 449.129 kb on - strand, within dksA at 449.129 kb on - strand, within dksA at 449.224 kb on + strand, within dksA at 449.403 kb on + strand at 449.404 kb on - strand at 449.424 kb on - strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.483 kb on + strand at 449.484 kb on - strand at 449.484 kb on - strand at 449.484 kb on - strand at 449.484 kb on - strand at 449.484 kb on - strand at 449.484 kb on - strand at 449.484 kb on - strand at 449.485 kb on + strand at 449.485 kb on + strand at 449.485 kb on + strand at 449.486 kb on - strand at 449.555 kb on + strand, within gluQRS at 449.556 kb on - strand, within gluQRS at 449.556 kb on - strand, within gluQRS at 449.556 kb on - strand, within gluQRS at 449.598 kb on + strand, within gluQRS at 449.598 kb on + strand, within gluQRS at 449.599 kb on - strand, within gluQRS at 449.599 kb on - strand, within gluQRS at 449.599 kb on - strand, within gluQRS at 449.606 kb on - strand, within gluQRS at 449.742 kb on + strand, within gluQRS at 449.743 kb on - strand, within gluQRS at 449.743 kb on - strand, within gluQRS at 449.743 kb on - strand, within gluQRS at 449.757 kb on + strand, within gluQRS at 449.758 kb on - strand, within gluQRS at 449.758 kb on - strand, within gluQRS at 449.758 kb on - strand, within gluQRS at 449.758 kb on - strand, within gluQRS at 449.763 kb on - strand, within gluQRS at 449.763 kb on - strand, within gluQRS at 449.765 kb on + strand, within gluQRS at 449.893 kb on + strand, within gluQRS at 449.894 kb on - strand, within gluQRS at 449.914 kb on + strand, within gluQRS at 449.950 kb on + strand, within gluQRS at 449.950 kb on + strand, within gluQRS at 449.981 kb on + strand, within gluQRS at 450.030 kb on + strand, within gluQRS at 450.031 kb on - strand, within gluQRS at 450.064 kb on - strand, within gluQRS at 450.110 kb on + strand, within gluQRS at 450.110 kb on + strand, within gluQRS at 450.111 kb on - strand, within gluQRS at 450.111 kb on - strand, within gluQRS at 450.111 kb on - strand, within gluQRS at 450.367 kb on + strand at 450.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 447,947 + thpR NOLOHH_02680 0.81 +1.0 447,957 + thpR NOLOHH_02680 0.82 +0.5 448,048 - -0.6 448,083 + -1.9 448,161 + sfsA NOLOHH_02685 0.14 +0.2 448,175 - sfsA NOLOHH_02685 0.16 +0.7 448,251 - sfsA NOLOHH_02685 0.27 +0.0 448,251 - sfsA NOLOHH_02685 0.27 +0.3 448,251 - sfsA NOLOHH_02685 0.27 -2.2 448,251 - sfsA NOLOHH_02685 0.27 +0.1 448,269 + sfsA NOLOHH_02685 0.29 -0.9 448,270 - sfsA NOLOHH_02685 0.29 +1.6 448,294 + sfsA NOLOHH_02685 0.33 +0.1 448,295 - sfsA NOLOHH_02685 0.33 +0.5 448,307 - sfsA NOLOHH_02685 0.34 -0.2 448,375 + sfsA NOLOHH_02685 0.44 -2.3 448,375 + sfsA NOLOHH_02685 0.44 +0.4 448,376 - sfsA NOLOHH_02685 0.44 +0.9 448,376 - sfsA NOLOHH_02685 0.44 -0.3 448,376 - sfsA NOLOHH_02685 0.44 +0.2 448,396 - sfsA NOLOHH_02685 0.47 -1.4 448,396 - sfsA NOLOHH_02685 0.47 -1.4 448,429 + sfsA NOLOHH_02685 0.52 -0.2 448,430 - sfsA NOLOHH_02685 0.52 -1.7 448,430 - sfsA NOLOHH_02685 0.52 +0.3 448,430 - sfsA NOLOHH_02685 0.52 +0.3 448,460 + sfsA NOLOHH_02685 0.56 -0.1 448,460 + sfsA NOLOHH_02685 0.56 -0.2 448,460 + sfsA NOLOHH_02685 0.56 +0.2 448,461 - sfsA NOLOHH_02685 0.56 +0.2 448,461 - sfsA NOLOHH_02685 0.56 +0.6 448,462 + sfsA NOLOHH_02685 0.56 +0.4 448,462 + sfsA NOLOHH_02685 0.56 -0.8 448,463 - sfsA NOLOHH_02685 0.57 +0.2 448,655 + sfsA NOLOHH_02685 0.84 +0.1 448,665 + sfsA NOLOHH_02685 0.85 -0.2 448,665 + sfsA NOLOHH_02685 0.85 +0.6 448,665 + sfsA NOLOHH_02685 0.85 -0.1 448,665 + sfsA NOLOHH_02685 0.85 +0.8 448,692 + sfsA NOLOHH_02685 0.89 +0.5 448,706 + -0.6 448,706 + +0.3 448,707 - -0.2 448,760 - +0.8 448,767 - +0.7 448,767 - +0.0 448,774 + -0.2 448,775 - -0.2 448,775 - +0.2 448,775 - -0.6 448,778 + -0.4 448,778 + +0.2 448,779 - -0.4 448,786 + +0.3 448,792 - +0.2 448,844 + +0.2 448,845 - +0.6 448,854 + +0.1 448,855 - -1.1 448,855 - +0.2 448,855 - +0.4 448,855 - -0.3 448,885 - -0.8 448,886 + +0.1 449,036 + dksA NOLOHH_02690 0.20 -1.3 449,036 + dksA NOLOHH_02690 0.20 -1.5 449,038 + dksA NOLOHH_02690 0.20 -0.6 449,038 + dksA NOLOHH_02690 0.20 -0.7 449,071 + dksA NOLOHH_02690 0.27 -2.3 449,128 + dksA NOLOHH_02690 0.40 -2.3 449,129 - dksA NOLOHH_02690 0.40 -0.7 449,129 - dksA NOLOHH_02690 0.40 -0.8 449,129 - dksA NOLOHH_02690 0.40 -0.4 449,129 - dksA NOLOHH_02690 0.40 -0.6 449,224 + dksA NOLOHH_02690 0.61 -0.8 449,403 + -0.2 449,404 - +0.3 449,424 - -0.4 449,483 + +0.1 449,483 + +0.6 449,483 + -1.0 449,483 + +0.1 449,483 + +0.0 449,483 + +1.8 449,483 + +0.4 449,483 + -1.5 449,483 + -0.3 449,483 + -0.6 449,483 + +0.6 449,483 + +0.0 449,484 - -0.2 449,484 - -0.7 449,484 - -0.2 449,484 - -0.0 449,484 - -0.1 449,484 - +0.1 449,484 - +0.3 449,485 + +0.8 449,485 + -0.1 449,485 + -1.4 449,486 - +0.6 449,555 + gluQRS NOLOHH_02695 0.13 -0.6 449,556 - gluQRS NOLOHH_02695 0.13 -0.4 449,556 - gluQRS NOLOHH_02695 0.13 -0.8 449,556 - gluQRS NOLOHH_02695 0.13 -0.3 449,598 + gluQRS NOLOHH_02695 0.17 +0.7 449,598 + gluQRS NOLOHH_02695 0.17 -0.2 449,599 - gluQRS NOLOHH_02695 0.17 +0.3 449,599 - gluQRS NOLOHH_02695 0.17 -0.9 449,599 - gluQRS NOLOHH_02695 0.17 +0.0 449,606 - gluQRS NOLOHH_02695 0.18 +0.5 449,742 + gluQRS NOLOHH_02695 0.33 -0.5 449,743 - gluQRS NOLOHH_02695 0.33 -3.2 449,743 - gluQRS NOLOHH_02695 0.33 -0.5 449,743 - gluQRS NOLOHH_02695 0.33 -0.4 449,757 + gluQRS NOLOHH_02695 0.34 -0.4 449,758 - gluQRS NOLOHH_02695 0.35 +1.2 449,758 - gluQRS NOLOHH_02695 0.35 +0.6 449,758 - gluQRS NOLOHH_02695 0.35 -1.1 449,758 - gluQRS NOLOHH_02695 0.35 +0.7 449,763 - gluQRS NOLOHH_02695 0.35 +1.1 449,763 - gluQRS NOLOHH_02695 0.35 +1.1 449,765 + gluQRS NOLOHH_02695 0.35 +0.2 449,893 + gluQRS NOLOHH_02695 0.49 +0.3 449,894 - gluQRS NOLOHH_02695 0.49 -2.7 449,914 + gluQRS NOLOHH_02695 0.51 +0.6 449,950 + gluQRS NOLOHH_02695 0.55 -0.6 449,950 + gluQRS NOLOHH_02695 0.55 -0.4 449,981 + gluQRS NOLOHH_02695 0.59 +0.3 450,030 + gluQRS NOLOHH_02695 0.64 -0.0 450,031 - gluQRS NOLOHH_02695 0.64 +0.6 450,064 - gluQRS NOLOHH_02695 0.68 +0.0 450,110 + gluQRS NOLOHH_02695 0.72 -0.8 450,110 + gluQRS NOLOHH_02695 0.72 +1.0 450,111 - gluQRS NOLOHH_02695 0.73 -0.2 450,111 - gluQRS NOLOHH_02695 0.73 +0.0 450,111 - gluQRS NOLOHH_02695 0.73 +0.3 450,367 + -0.2 450,367 + -1.2
Or see this region's nucleotide sequence