Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00430 and NOLOHH_00435 are separated by 61 nucleotides NOLOHH_00435 and NOLOHH_00440 are separated by 36 nucleotides NOLOHH_00440 and NOLOHH_00445 are separated by 90 nucleotides NOLOHH_00445 and NOLOHH_00450 are separated by 103 nucleotides NOLOHH_00450 and NOLOHH_00455 are separated by 40 nucleotides
NOLOHH_00430: NOLOHH_00430 - Putative integral membrane protein, at 29,315 to 29,530
_00430
NOLOHH_00435: NOLOHH_00435 - hypothetical protein, at 29,592 to 29,876
_00435
NOLOHH_00440: NOLOHH_00440 - hypothetical protein, at 29,913 to 30,215
_00440
NOLOHH_00445: NOLOHH_00445 - peptidyl-arginine deiminase, at 30,306 to 30,965
_00445
NOLOHH_00450: NOLOHH_00450 - resolvase, at 31,069 to 31,893
_00450
NOLOHH_00455: NOLOHH_00455 - hypothetical protein, at 31,934 to 32,422
_00455
Position (kb) 30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 29.322 kb on - strand at 29.426 kb on + strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.530 kb on + strand at 29.664 kb on + strand, within NOLOHH_00435 at 29.664 kb on + strand, within NOLOHH_00435 at 29.664 kb on + strand, within NOLOHH_00435 at 29.668 kb on + strand, within NOLOHH_00435 at 29.669 kb on - strand, within NOLOHH_00435 at 29.705 kb on - strand, within NOLOHH_00435 at 29.723 kb on - strand, within NOLOHH_00435 at 29.730 kb on + strand, within NOLOHH_00435 at 29.731 kb on - strand, within NOLOHH_00435 at 29.788 kb on - strand, within NOLOHH_00435 at 29.789 kb on + strand, within NOLOHH_00435 at 29.790 kb on - strand, within NOLOHH_00435 at 29.790 kb on - strand, within NOLOHH_00435 at 29.882 kb on + strand at 29.910 kb on - strand at 29.915 kb on - strand at 30.262 kb on - strand at 30.273 kb on - strand at 30.273 kb on - strand at 30.273 kb on - strand at 30.277 kb on - strand at 30.423 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.434 kb on + strand, within NOLOHH_00445 at 30.718 kb on + strand, within NOLOHH_00445 at 30.719 kb on - strand, within NOLOHH_00445 at 30.719 kb on - strand, within NOLOHH_00445 at 30.779 kb on - strand, within NOLOHH_00445 at 30.880 kb on - strand, within NOLOHH_00445 at 30.924 kb on + strand at 31.023 kb on - strand at 31.023 kb on - strand at 31.025 kb on - strand at 31.031 kb on - strand at 31.269 kb on - strand, within NOLOHH_00450 at 31.378 kb on + strand, within NOLOHH_00450 at 31.378 kb on + strand, within NOLOHH_00450 at 31.378 kb on + strand, within NOLOHH_00450 at 31.378 kb on + strand, within NOLOHH_00450 at 31.378 kb on + strand, within NOLOHH_00450 at 31.379 kb on - strand, within NOLOHH_00450 at 31.379 kb on - strand, within NOLOHH_00450 at 31.379 kb on - strand, within NOLOHH_00450 at 31.428 kb on - strand, within NOLOHH_00450 at 31.437 kb on + strand, within NOLOHH_00450 at 31.449 kb on - strand, within NOLOHH_00450 at 31.478 kb on - strand, within NOLOHH_00450 at 31.519 kb on + strand, within NOLOHH_00450 at 31.519 kb on + strand, within NOLOHH_00450 at 31.519 kb on + strand, within NOLOHH_00450 at 31.519 kb on + strand, within NOLOHH_00450 at 31.520 kb on - strand, within NOLOHH_00450 at 31.520 kb on - strand, within NOLOHH_00450 at 31.520 kb on - strand, within NOLOHH_00450 at 31.581 kb on + strand, within NOLOHH_00450 at 31.581 kb on + strand, within NOLOHH_00450 at 31.582 kb on - strand, within NOLOHH_00450 at 31.582 kb on - strand, within NOLOHH_00450 at 31.582 kb on - strand, within NOLOHH_00450 at 31.582 kb on - strand, within NOLOHH_00450 at 31.582 kb on - strand, within NOLOHH_00450 at 31.635 kb on + strand, within NOLOHH_00450 at 31.636 kb on - strand, within NOLOHH_00450 at 31.703 kb on + strand, within NOLOHH_00450 at 31.703 kb on + strand, within NOLOHH_00450 at 31.707 kb on + strand, within NOLOHH_00450 at 31.707 kb on + strand, within NOLOHH_00450 at 31.707 kb on + strand, within NOLOHH_00450 at 31.707 kb on + strand, within NOLOHH_00450 at 31.708 kb on - strand, within NOLOHH_00450 at 31.731 kb on - strand, within NOLOHH_00450 at 31.837 kb on + strand at 31.837 kb on + strand at 31.837 kb on + strand at 31.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 29,322 - +0.7 29,426 + NOLOHH_00430 0.51 +0.1 29,474 - NOLOHH_00430 0.74 +1.0 29,474 - NOLOHH_00430 0.74 -0.0 29,474 - NOLOHH_00430 0.74 +0.5 29,530 + +0.4 29,664 + NOLOHH_00435 0.25 -0.2 29,664 + NOLOHH_00435 0.25 -0.6 29,664 + NOLOHH_00435 0.25 -1.2 29,668 + NOLOHH_00435 0.27 +0.0 29,669 - NOLOHH_00435 0.27 +0.3 29,705 - NOLOHH_00435 0.40 -0.0 29,723 - NOLOHH_00435 0.46 +0.7 29,730 + NOLOHH_00435 0.48 +0.3 29,731 - NOLOHH_00435 0.49 +0.4 29,788 - NOLOHH_00435 0.69 -0.2 29,789 + NOLOHH_00435 0.69 +0.9 29,790 - NOLOHH_00435 0.69 +0.2 29,790 - NOLOHH_00435 0.69 +0.1 29,882 + -0.6 29,910 - -0.7 29,915 - -0.2 30,262 - -0.6 30,273 - -0.3 30,273 - +0.5 30,273 - +0.5 30,277 - -0.8 30,423 - NOLOHH_00445 0.18 -0.6 30,431 - NOLOHH_00445 0.19 -1.8 30,431 - NOLOHH_00445 0.19 -1.0 30,431 - NOLOHH_00445 0.19 -1.5 30,431 - NOLOHH_00445 0.19 -2.8 30,431 - NOLOHH_00445 0.19 -1.0 30,434 + NOLOHH_00445 0.19 -0.3 30,718 + NOLOHH_00445 0.62 -1.4 30,719 - NOLOHH_00445 0.63 -1.4 30,719 - NOLOHH_00445 0.63 -0.9 30,779 - NOLOHH_00445 0.72 -1.4 30,880 - NOLOHH_00445 0.87 -2.4 30,924 + +0.1 31,023 - +0.0 31,023 - +0.4 31,025 - +0.5 31,031 - +0.8 31,269 - NOLOHH_00450 0.24 +0.1 31,378 + NOLOHH_00450 0.37 -0.1 31,378 + NOLOHH_00450 0.37 +0.6 31,378 + NOLOHH_00450 0.37 -0.7 31,378 + NOLOHH_00450 0.37 -0.0 31,378 + NOLOHH_00450 0.37 +0.5 31,379 - NOLOHH_00450 0.38 +0.5 31,379 - NOLOHH_00450 0.38 +0.4 31,379 - NOLOHH_00450 0.38 +0.8 31,428 - NOLOHH_00450 0.44 +0.1 31,437 + NOLOHH_00450 0.45 +0.9 31,449 - NOLOHH_00450 0.46 +0.2 31,478 - NOLOHH_00450 0.50 +0.4 31,519 + NOLOHH_00450 0.55 +0.5 31,519 + NOLOHH_00450 0.55 +0.1 31,519 + NOLOHH_00450 0.55 -0.1 31,519 + NOLOHH_00450 0.55 +0.5 31,520 - NOLOHH_00450 0.55 +0.8 31,520 - NOLOHH_00450 0.55 -0.4 31,520 - NOLOHH_00450 0.55 -0.1 31,581 + NOLOHH_00450 0.62 +0.3 31,581 + NOLOHH_00450 0.62 +0.1 31,582 - NOLOHH_00450 0.62 +0.4 31,582 - NOLOHH_00450 0.62 -0.2 31,582 - NOLOHH_00450 0.62 +0.1 31,582 - NOLOHH_00450 0.62 +0.5 31,582 - NOLOHH_00450 0.62 +0.6 31,635 + NOLOHH_00450 0.69 +0.8 31,636 - NOLOHH_00450 0.69 -0.3 31,703 + NOLOHH_00450 0.77 +0.6 31,703 + NOLOHH_00450 0.77 -0.3 31,707 + NOLOHH_00450 0.77 -0.3 31,707 + NOLOHH_00450 0.77 +0.4 31,707 + NOLOHH_00450 0.77 +0.5 31,707 + NOLOHH_00450 0.77 -0.5 31,708 - NOLOHH_00450 0.77 -0.8 31,731 - NOLOHH_00450 0.80 -0.2 31,837 + +0.4 31,837 + +0.5 31,837 + -1.7 31,936 - +0.0
Or see this region's nucleotide sequence