Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00170 and NOLOHH_00175 are separated by 1 nucleotides NOLOHH_00175 and NOLOHH_00180 are separated by 12 nucleotides NOLOHH_00180 and NOLOHH_00185 are separated by 431 nucleotides NOLOHH_00185 and NOLOHH_00190 overlap by 8 nucleotides
NOLOHH_00170: NOLOHH_00170 - hypothetical protein, at 16,851 to 17,219
_00170
NOLOHH_00175: NOLOHH_00175 - StdB protein, at 17,221 to 17,931
_00175
NOLOHH_00180: NOLOHH_00180 - Plasmid stability protein stbA, at 17,944 to 18,387
_00180
NOLOHH_00185: NOLOHH_00185 - hypothetical protein, at 18,819 to 19,166
_00185
NOLOHH_00190: NOLOHH_00190 - conjugal transfer protein TraJ, at 19,159 to 20,736
_00190
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.080 kb on - strand, within NOLOHH_00170 at 17.197 kb on - strand at 17.418 kb on - strand, within NOLOHH_00175 at 17.466 kb on + strand, within NOLOHH_00175 at 17.547 kb on + strand, within NOLOHH_00175 at 17.680 kb on - strand, within NOLOHH_00175 at 17.887 kb on - strand at 17.909 kb on + strand at 17.909 kb on + strand at 17.910 kb on - strand at 17.965 kb on + strand at 17.966 kb on - strand at 18.073 kb on - strand, within NOLOHH_00180 at 18.073 kb on - strand, within NOLOHH_00180 at 18.113 kb on - strand, within NOLOHH_00180 at 18.113 kb on - strand, within NOLOHH_00180 at 18.113 kb on - strand, within NOLOHH_00180 at 18.162 kb on + strand, within NOLOHH_00180 at 18.162 kb on + strand, within NOLOHH_00180 at 18.192 kb on + strand, within NOLOHH_00180 at 18.193 kb on - strand, within NOLOHH_00180 at 18.318 kb on + strand, within NOLOHH_00180 at 18.319 kb on - strand, within NOLOHH_00180 at 18.319 kb on - strand, within NOLOHH_00180 at 18.322 kb on + strand, within NOLOHH_00180 at 18.323 kb on - strand, within NOLOHH_00180 at 18.391 kb on - strand at 18.391 kb on - strand at 18.424 kb on - strand at 18.503 kb on - strand at 18.603 kb on - strand at 18.635 kb on - strand at 18.655 kb on + strand at 18.835 kb on + strand at 18.836 kb on - strand at 18.897 kb on + strand, within NOLOHH_00185 at 18.897 kb on + strand, within NOLOHH_00185 at 18.897 kb on + strand, within NOLOHH_00185 at 18.960 kb on - strand, within NOLOHH_00185 at 19.039 kb on + strand, within NOLOHH_00185 at 19.039 kb on + strand, within NOLOHH_00185 at 19.045 kb on + strand, within NOLOHH_00185 at 19.045 kb on + strand, within NOLOHH_00185 at 19.046 kb on - strand, within NOLOHH_00185 at 19.061 kb on + strand, within NOLOHH_00185 at 19.061 kb on + strand, within NOLOHH_00185 at 19.061 kb on + strand, within NOLOHH_00185 at 19.180 kb on - strand at 19.219 kb on - strand at 19.246 kb on + strand at 19.246 kb on + strand at 19.246 kb on + strand at 19.291 kb on - strand at 19.348 kb on - strand, within NOLOHH_00190
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 17,080 - NOLOHH_00170 0.62 -0.5 17,197 - -0.4 17,418 - NOLOHH_00175 0.28 -0.9 17,466 + NOLOHH_00175 0.34 +0.3 17,547 + NOLOHH_00175 0.46 -0.9 17,680 - NOLOHH_00175 0.65 -0.5 17,887 - -0.5 17,909 + -3.1 17,909 + -0.3 17,910 - -0.8 17,965 + -0.0 17,966 - -0.6 18,073 - NOLOHH_00180 0.29 -0.3 18,073 - NOLOHH_00180 0.29 -0.2 18,113 - NOLOHH_00180 0.38 -1.2 18,113 - NOLOHH_00180 0.38 -1.3 18,113 - NOLOHH_00180 0.38 -0.0 18,162 + NOLOHH_00180 0.49 +0.3 18,162 + NOLOHH_00180 0.49 -1.4 18,192 + NOLOHH_00180 0.56 -0.1 18,193 - NOLOHH_00180 0.56 -1.4 18,318 + NOLOHH_00180 0.84 -1.0 18,319 - NOLOHH_00180 0.84 -2.1 18,319 - NOLOHH_00180 0.84 -1.6 18,322 + NOLOHH_00180 0.85 +0.2 18,323 - NOLOHH_00180 0.85 -0.2 18,391 - -1.5 18,391 - -0.5 18,424 - -0.2 18,503 - +0.0 18,603 - -0.2 18,635 - -0.0 18,655 + +0.1 18,835 + -1.1 18,836 - -0.5 18,897 + NOLOHH_00185 0.22 -0.5 18,897 + NOLOHH_00185 0.22 -0.3 18,897 + NOLOHH_00185 0.22 +0.1 18,960 - NOLOHH_00185 0.41 +0.3 19,039 + NOLOHH_00185 0.63 -0.0 19,039 + NOLOHH_00185 0.63 -0.6 19,045 + NOLOHH_00185 0.65 +0.1 19,045 + NOLOHH_00185 0.65 +0.4 19,046 - NOLOHH_00185 0.65 +0.0 19,061 + NOLOHH_00185 0.70 -2.3 19,061 + NOLOHH_00185 0.70 +0.6 19,061 + NOLOHH_00185 0.70 -0.5 19,180 - +0.6 19,219 - +0.2 19,246 + +0.4 19,246 + +0.3 19,246 + +0.2 19,291 - -0.1 19,348 - NOLOHH_00190 0.12 -1.3
Or see this region's nucleotide sequence