Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04040

Experiment: B-glucan from yeast; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	B-glucan from yeast; autoclaved 2.5 mg/ml (C)
1,137,387	+		ABI39_RS04035	0.66	+0.8
1,137,426	+		ABI39_RS04035	0.68	+0.8
1,137,427	-		ABI39_RS04035	0.68	-0.7
1,137,546	+		ABI39_RS04035	0.72	+0.6
1,137,547	-		ABI39_RS04035	0.72	+1.0
1,137,547	-		ABI39_RS04035	0.72	-0.2
1,137,547	-		ABI39_RS04035	0.72	+0.2
1,137,616	+		ABI39_RS04035	0.75	+0.4
1,137,982	-		ABI39_RS04035	0.89	-0.2
1,138,016	-				+0.3
1,138,018	+				+0.8
1,138,019	-				-0.8
1,138,108	-				-0.1
1,138,123	-				+0.2
1,138,124	+				+0.0
1,138,164	+				+1.2
1,138,181	-				+0.5
1,138,212	+				-0.7
1,138,267	+				+0.7
1,138,303	-				-0.2
1,138,323	+				-0.3
1,138,338	-				+0.1
1,138,354	-				+0.2
1,138,481	+				-0.1
1,138,481	+				+0.2
1,138,491	+				-0.8
1,138,568	+		ABI39_RS04040	0.13	-0.1
1,138,671	+		ABI39_RS04040	0.19	-0.7
1,138,756	+		ABI39_RS04040	0.24	-1.8
1,138,794	+		ABI39_RS04040	0.26	-0.7
1,138,839	+		ABI39_RS04040	0.29	-0.3
1,138,945	-		ABI39_RS04040	0.35	+0.3
1,139,075	+		ABI39_RS04040	0.42	-0.5
1,139,075	+		ABI39_RS04040	0.42	-0.5
1,139,075	+		ABI39_RS04040	0.42	-0.6
1,139,075	+		ABI39_RS04040	0.42	+0.8
1,139,171	-		ABI39_RS04040	0.48	-0.4
1,139,176	-		ABI39_RS04040	0.48	+0.1
1,139,409	-		ABI39_RS04040	0.62	-1.8
1,139,409	-		ABI39_RS04040	0.62	+0.3
1,139,409	-		ABI39_RS04040	0.62	-0.2
1,139,486	+		ABI39_RS04040	0.67	+0.8
1,139,489	+		ABI39_RS04040	0.67	+1.1
1,139,543	-		ABI39_RS04040	0.70	+0.1
1,139,612	+		ABI39_RS04040	0.74	+1.0
1,139,615	-		ABI39_RS04040	0.74	+0.7
1,139,623	-		ABI39_RS04040	0.75	-0.2
1,139,623	-		ABI39_RS04040	0.75	-0.2
1,139,713	-		ABI39_RS04040	0.80	-0.5
1,139,734	-		ABI39_RS04040	0.81	+1.2
1,139,777	+		ABI39_RS04040	0.84	-0.6
1,139,810	-		ABI39_RS04040	0.86	-0.4
1,139,811	+		ABI39_RS04040	0.86	-0.1
1,139,877	+		ABI39_RS04040	0.90	+0.1
1,139,968	+				-0.1
1,139,972	-				+0.2
1,140,001	+				+0.0
1,140,034	+				-0.1
1,140,053	-				-0.0
1,140,104	-				-2.4
1,140,205	+				+0.4
1,140,234	-				+0.1
1,140,257	+				+0.1
1,140,386	-				+0.1
1,140,414	+		ABI39_RS04045	0.10	+0.8
1,140,414	+		ABI39_RS04045	0.10	-0.4
1,140,415	-		ABI39_RS04045	0.10	+0.3
1,140,419	+		ABI39_RS04045	0.10	+0.3
1,140,431	+		ABI39_RS04045	0.11	+0.5
1,140,432	-		ABI39_RS04045	0.11	-0.3
1,140,432	-		ABI39_RS04045	0.11	+0.4
1,140,464	-		ABI39_RS04045	0.12	-0.3
1,140,511	+		ABI39_RS04045	0.13	-0.9
1,140,515	+		ABI39_RS04045	0.13	-0.8
1,140,526	+		ABI39_RS04045	0.14	-2.8
1,140,526	+		ABI39_RS04045	0.14	-0.2
1,140,552	-		ABI39_RS04045	0.14	-1.4
1,140,556	+		ABI39_RS04045	0.14	+0.1
1,140,584	+		ABI39_RS04045	0.15	+0.1
1,140,585	-		ABI39_RS04045	0.15	+0.9
1,140,594	-		ABI39_RS04045	0.16	+0.4
1,140,638	-		ABI39_RS04045	0.17	+0.9
1,140,639	+		ABI39_RS04045	0.17	-0.6
1,140,640	-		ABI39_RS04045	0.17	+0.6
1,140,674	+		ABI39_RS04045	0.18	-0.3
1,140,713	+		ABI39_RS04045	0.19	-1.2
1,140,716	-		ABI39_RS04045	0.19	+0.0
1,140,752	+		ABI39_RS04045	0.20	-0.8
1,140,753	-		ABI39_RS04045	0.20	+0.4
1,140,774	-		ABI39_RS04045	0.21	-0.3
1,140,812	+		ABI39_RS04045	0.22	+0.6
1,140,819	-		ABI39_RS04045	0.22	-0.0
1,140,831	+		ABI39_RS04045	0.23	-1.1
1,141,017	-		ABI39_RS04045	0.28	-0.2