Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS22885

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; filtered 1 mg/ml (C)
4,812,724	+				+1.5
4,812,725	-				-0.9
4,812,771	+				+0.1
4,812,861	-				+0.9
4,813,121	+		ABI39_RS19150	0.61	-1.5
4,813,122	-		ABI39_RS19150	0.62	-0.6
4,813,161	+		ABI39_RS19150	0.83	-1.1
4,813,161	+		ABI39_RS19150	0.83	+1.2
4,813,166	+		ABI39_RS19150	0.86	+0.5
4,813,171	-		ABI39_RS19150	0.89	-0.4
4,813,171	-		ABI39_RS19150	0.89	-0.4
4,813,352	+				-1.9
4,813,353	-				+1.2
4,813,357	-				+0.1
4,813,357	-				-0.7
4,813,357	-				-0.1
4,813,421	+				+0.7
4,813,446	+				-0.1
4,813,450	-				+0.9
4,813,478	+				+0.1
4,813,485	-				-0.0
4,813,487	+				+0.8
4,813,523	-				+0.3
4,813,563	+				+0.2
4,813,584	-				-0.6
4,813,596	+				-0.3
4,813,672	+				+0.5
4,813,674	+				-0.6
4,813,790	+				-0.2
4,814,122	+		ABI39_RS22885	0.35	+1.0
4,814,123	-		ABI39_RS22885	0.35	+0.4
4,814,262	+		ABI39_RS22885	0.46	+0.4
4,814,325	-		ABI39_RS22885	0.51	+1.1
4,814,351	+		ABI39_RS22885	0.53	+0.9
4,814,352	-		ABI39_RS22885	0.53	+1.4
4,814,358	-		ABI39_RS22885	0.54	+1.0
4,814,393	+		ABI39_RS22885	0.57	+1.0
4,814,393	+		ABI39_RS22885	0.57	+0.5
4,814,512	+		ABI39_RS22885	0.66	-1.8
4,814,513	-		ABI39_RS22885	0.66	-1.1
4,814,937	-				-1.5
4,814,981	+				-2.2
4,815,033	-				-0.7
4,815,033	-				+0.5
4,815,053	-				+1.1
4,815,071	+				-0.7
4,815,102	-				-0.0
4,815,396	-		ABI39_RS22890	0.38	-0.1
4,815,399	+		ABI39_RS22890	0.38	+2.1
4,815,400	-		ABI39_RS22890	0.38	+0.8
4,815,459	+		ABI39_RS22890	0.44	-1.3
4,815,486	+		ABI39_RS22890	0.47	+0.7
4,815,576	+		ABI39_RS22890	0.56	-0.5
4,815,577	-		ABI39_RS22890	0.56	+0.5
4,815,577	-		ABI39_RS22890	0.56	-0.5
4,815,754	+		ABI39_RS22890	0.74	+0.6
4,815,791	-		ABI39_RS22890	0.78	+0.1
4,815,831	+		ABI39_RS22890	0.82	-1.1
4,815,858	+		ABI39_RS22890	0.84	+0.6
4,815,904	+		ABI39_RS22890	0.89	-0.3
4,815,905	-		ABI39_RS22890	0.89	+0.2
4,815,909	-		ABI39_RS22890	0.89	-0.5