Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18245

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; filtered 1 mg/ml (C)
4,599,361	+				-0.2
4,600,308	+				-0.1
4,600,309	-				+0.3
4,600,476	-				+0.2
4,600,484	-				-0.4
4,600,590	-				-0.2
4,600,701	-		ABI39_RS18245	0.13	+0.7
4,600,701	-		ABI39_RS18245	0.13	-2.0
4,600,713	-		ABI39_RS18245	0.13	+0.5
4,600,714	+		ABI39_RS18245	0.13	-0.5
4,600,714	+		ABI39_RS18245	0.13	+0.4
4,600,803	-		ABI39_RS18245	0.16	-0.1
4,600,857	+		ABI39_RS18245	0.18	+0.6
4,600,882	+		ABI39_RS18245	0.19	+0.3
4,600,917	+		ABI39_RS18245	0.20	-0.4
4,600,917	+		ABI39_RS18245	0.20	-0.2
4,600,929	+		ABI39_RS18245	0.21	-0.0
4,600,930	-		ABI39_RS18245	0.21	+0.6
4,600,958	+		ABI39_RS18245	0.22	+0.8
4,600,959	-		ABI39_RS18245	0.22	+0.8
4,601,125	+		ABI39_RS18245	0.28	-0.2
4,601,166	-		ABI39_RS18245	0.29	-0.9
4,601,200	+		ABI39_RS18245	0.30	-0.3
4,601,201	-		ABI39_RS18245	0.30	-0.3
4,601,204	+		ABI39_RS18245	0.31	-1.4
4,601,204	+		ABI39_RS18245	0.31	-1.1
4,601,293	-		ABI39_RS18245	0.34	-1.9
4,601,457	-		ABI39_RS18245	0.40	-1.5
4,601,582	-		ABI39_RS18245	0.44	-0.4
4,601,598	-		ABI39_RS18245	0.45	+0.2
4,602,147	-		ABI39_RS18245	0.64	+0.2
4,602,169	-		ABI39_RS18245	0.65	+0.3
4,602,361	+		ABI39_RS18245	0.72	-0.6
4,602,361	+		ABI39_RS18245	0.72	-0.7
4,602,361	+		ABI39_RS18245	0.72	-0.2
4,602,430	-		ABI39_RS18245	0.74	-0.9
4,602,485	+		ABI39_RS18245	0.76	+0.1
4,602,492	+		ABI39_RS18245	0.76	-0.1
4,602,657	-		ABI39_RS18245	0.82	-0.4
4,602,679	+		ABI39_RS18245	0.83	-0.8
4,602,708	+		ABI39_RS18245	0.84	-1.0
4,602,709	-		ABI39_RS18245	0.84	-1.1
4,602,730	-		ABI39_RS18245	0.85	-2.5
4,602,736	+		ABI39_RS18245	0.85	-1.4
4,602,737	-		ABI39_RS18245	0.85	-0.2
4,602,772	+		ABI39_RS18245	0.86	+0.2
4,602,773	-		ABI39_RS18245	0.86	-3.1
4,603,002	+				+0.8
4,603,002	+				-0.7
4,603,002	+				-0.1
4,603,003	-				-0.1
4,603,003	-				+1.0
4,603,036	-				+1.2
4,603,058	+				-0.1
4,603,061	+				+0.5
4,603,128	-				-0.9
4,603,159	+				+0.2
4,603,184	-				+0.3
4,603,184	-				+0.8
4,603,188	-				-0.3
4,603,192	+				-2.0
4,603,272	-				-2.0
4,603,293	+				+0.4
4,603,364	+		ABI39_RS18250	0.13	-0.4
4,603,386	+		ABI39_RS18250	0.14	+0.3
4,603,387	-		ABI39_RS18250	0.14	-0.1
4,603,553	-		ABI39_RS18250	0.25	+0.5
4,603,585	-		ABI39_RS18250	0.27	+0.4
4,603,609	-		ABI39_RS18250	0.29	-0.0
4,603,697	-		ABI39_RS18250	0.35	-0.1
4,603,796	+		ABI39_RS18250	0.42	-2.5
4,603,799	-		ABI39_RS18250	0.42	-0.4
4,603,887	+		ABI39_RS18250	0.48	-0.2
4,603,939	-		ABI39_RS18250	0.51	-0.7
4,603,966	+		ABI39_RS18250	0.53	+0.4
4,603,978	+		ABI39_RS18250	0.54	+0.1
4,604,124	+		ABI39_RS18250	0.64	-0.2
4,604,145	-		ABI39_RS18250	0.65	-0.0