Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS15925 and ABI39_RS15930 are separated by 168 nucleotides ABI39_RS15930 and ABI39_RS15935 are separated by 2 nucleotides ABI39_RS15935 and ABI39_RS15940 are separated by 11 nucleotides
ABI39_RS15925: ABI39_RS15925 - helix-turn-helix domain-containing protein, at 4,087,570 to 4,087,932
_RS15925
ABI39_RS15930: ABI39_RS15930 - hypothetical protein, at 4,088,101 to 4,088,736
_RS15930
ABI39_RS15935: ABI39_RS15935 - hypothetical protein, at 4,088,739 to 4,089,335
_RS15935
ABI39_RS15940: ABI39_RS15940 - hypothetical protein, at 4,089,347 to 4,090,468
_RS15940
Position (kb) 4088
4089
4090 Strain fitness (log2 ratio) -2
-1
0
1 at 4087.763 kb on + strand, within ABI39_RS15925 at 4087.763 kb on + strand, within ABI39_RS15925 at 4087.840 kb on + strand, within ABI39_RS15925 at 4087.840 kb on + strand, within ABI39_RS15925 at 4087.951 kb on - strand at 4087.986 kb on + strand at 4088.027 kb on + strand at 4088.053 kb on + strand at 4088.054 kb on - strand at 4088.163 kb on + strand at 4088.260 kb on - strand, within ABI39_RS15930 at 4088.329 kb on - strand, within ABI39_RS15930 at 4088.385 kb on + strand, within ABI39_RS15930 at 4088.582 kb on - strand, within ABI39_RS15930 at 4088.712 kb on + strand at 4088.739 kb on - strand at 4088.753 kb on + strand at 4088.757 kb on + strand at 4088.949 kb on + strand, within ABI39_RS15935 at 4088.949 kb on + strand, within ABI39_RS15935 at 4088.978 kb on + strand, within ABI39_RS15935 at 4089.004 kb on - strand, within ABI39_RS15935 at 4089.047 kb on - strand, within ABI39_RS15935 at 4089.059 kb on + strand, within ABI39_RS15935 at 4089.076 kb on - strand, within ABI39_RS15935 at 4089.082 kb on + strand, within ABI39_RS15935 at 4089.083 kb on - strand, within ABI39_RS15935 at 4089.083 kb on - strand, within ABI39_RS15935 at 4089.130 kb on + strand, within ABI39_RS15935 at 4089.131 kb on - strand, within ABI39_RS15935 at 4089.134 kb on - strand, within ABI39_RS15935 at 4089.134 kb on - strand, within ABI39_RS15935 at 4089.200 kb on + strand, within ABI39_RS15935 at 4089.221 kb on + strand, within ABI39_RS15935 at 4089.297 kb on - strand at 4089.450 kb on - strand at 4089.473 kb on - strand, within ABI39_RS15940 at 4089.491 kb on + strand, within ABI39_RS15940 at 4089.676 kb on + strand, within ABI39_RS15940 at 4089.776 kb on - strand, within ABI39_RS15940 at 4089.945 kb on - strand, within ABI39_RS15940 at 4090.231 kb on + strand, within ABI39_RS15940 at 4090.231 kb on + strand, within ABI39_RS15940 at 4090.280 kb on + strand, within ABI39_RS15940 at 4090.310 kb on - strand, within ABI39_RS15940 at 4090.310 kb on - strand, within ABI39_RS15940
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 4,087,763 + ABI39_RS15925 0.53 -0.1 4,087,763 + ABI39_RS15925 0.53 +0.5 4,087,840 + ABI39_RS15925 0.74 +1.0 4,087,840 + ABI39_RS15925 0.74 +0.2 4,087,951 - +0.5 4,087,986 + +0.6 4,088,027 + -0.8 4,088,053 + +1.2 4,088,054 - -0.9 4,088,163 + +0.1 4,088,260 - ABI39_RS15930 0.25 +0.9 4,088,329 - ABI39_RS15930 0.36 -0.3 4,088,385 + ABI39_RS15930 0.45 -0.1 4,088,582 - ABI39_RS15930 0.76 -0.1 4,088,712 + +0.3 4,088,739 - +0.2 4,088,753 + -2.1 4,088,757 + -0.4 4,088,949 + ABI39_RS15935 0.35 -0.9 4,088,949 + ABI39_RS15935 0.35 -0.5 4,088,978 + ABI39_RS15935 0.40 -0.3 4,089,004 - ABI39_RS15935 0.44 +0.8 4,089,047 - ABI39_RS15935 0.52 -1.4 4,089,059 + ABI39_RS15935 0.54 -0.5 4,089,076 - ABI39_RS15935 0.56 -0.1 4,089,082 + ABI39_RS15935 0.57 -1.1 4,089,083 - ABI39_RS15935 0.58 +0.3 4,089,083 - ABI39_RS15935 0.58 +0.1 4,089,130 + ABI39_RS15935 0.65 -0.3 4,089,131 - ABI39_RS15935 0.66 +0.7 4,089,134 - ABI39_RS15935 0.66 -0.3 4,089,134 - ABI39_RS15935 0.66 +0.1 4,089,200 + ABI39_RS15935 0.77 -0.2 4,089,221 + ABI39_RS15935 0.81 +0.0 4,089,297 - -0.1 4,089,450 - -0.6 4,089,473 - ABI39_RS15940 0.11 -1.1 4,089,491 + ABI39_RS15940 0.13 -0.8 4,089,676 + ABI39_RS15940 0.29 +0.3 4,089,776 - ABI39_RS15940 0.38 -1.5 4,089,945 - ABI39_RS15940 0.53 -1.0 4,090,231 + ABI39_RS15940 0.79 -0.8 4,090,231 + ABI39_RS15940 0.79 -1.8 4,090,280 + ABI39_RS15940 0.83 -0.5 4,090,310 - ABI39_RS15940 0.86 -1.0 4,090,310 - ABI39_RS15940 0.86 -1.7
Or see this region's nucleotide sequence