Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15275

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; filtered 1 mg/ml (C)
3,955,342	-		ABI39_RS15270	0.53	+0.1
3,955,369	-		ABI39_RS15270	0.54	-0.3
3,955,389	+		ABI39_RS15270	0.55	-0.5
3,955,400	-		ABI39_RS15270	0.56	-0.3
3,955,409	+		ABI39_RS15270	0.56	-2.1
3,955,410	-		ABI39_RS15270	0.56	+0.5
3,955,655	+		ABI39_RS15270	0.69	-3.8
3,955,677	+		ABI39_RS15270	0.70	-1.3
3,955,704	+		ABI39_RS15270	0.71	+0.1
3,955,794	+		ABI39_RS15270	0.76	-1.5
3,955,892	-		ABI39_RS15270	0.80	-1.7
3,956,023	-		ABI39_RS15270	0.87	+0.3
3,956,044	-		ABI39_RS15270	0.88	+0.7
3,956,050	+		ABI39_RS15270	0.88	-0.3
3,956,174	+				-1.5
3,956,175	-				-0.8
3,956,272	-				+0.3
3,956,272	-				+0.1
3,956,442	+				-0.8
3,956,458	-				-0.5
3,956,493	-		ABI39_RS15275	0.13	+1.7
3,956,552	-		ABI39_RS15275	0.18	-3.2
3,956,586	+		ABI39_RS15275	0.21	+0.4
3,956,616	+		ABI39_RS15275	0.23	-1.3
3,956,617	-		ABI39_RS15275	0.23	+0.9
3,956,640	+		ABI39_RS15275	0.25	-0.3
3,956,674	-		ABI39_RS15275	0.28	-0.6
3,956,678	-		ABI39_RS15275	0.28	-1.3
3,956,789	+		ABI39_RS15275	0.38	+4.0
3,956,874	+		ABI39_RS15275	0.45	+0.3
3,956,874	+		ABI39_RS15275	0.45	-1.2
3,956,874	-		ABI39_RS15275	0.45	+0.3
3,956,906	-		ABI39_RS15275	0.48	+1.1
3,956,908	-		ABI39_RS15275	0.48	-0.2
3,956,998	-		ABI39_RS15275	0.56	+0.5
3,957,045	+		ABI39_RS15275	0.60	+0.1
3,957,050	-		ABI39_RS15275	0.60	-0.5
3,957,050	-		ABI39_RS15275	0.60	-0.2
3,957,050	-		ABI39_RS15275	0.60	-1.7
3,957,202	+		ABI39_RS15275	0.73	+1.3
3,957,214	+		ABI39_RS15275	0.74	+0.1
3,957,226	+		ABI39_RS15275	0.75	+0.1
3,957,227	-		ABI39_RS15275	0.75	-0.5
3,957,471	+				-0.3
3,957,512	-				+0.7
3,957,528	+				-0.3
3,957,532	+				+1.2
3,957,575	+				-3.3
3,957,592	+				-0.5
3,957,646	-				-0.3
3,957,672	+				-0.3
3,957,698	+				+0.1
3,957,699	-				+0.1
3,957,745	+		ABI39_RS15280	0.11	+0.4
3,957,851	-		ABI39_RS15280	0.16	+0.5
3,957,987	+		ABI39_RS15280	0.22	-0.0
3,957,996	+		ABI39_RS15280	0.22	+0.3
3,958,137	+		ABI39_RS15280	0.29	-0.1
3,958,137	+		ABI39_RS15280	0.29	+0.5
3,958,190	+		ABI39_RS15280	0.31	-1.2
3,958,191	-		ABI39_RS15280	0.31	-0.2
3,958,247	-		ABI39_RS15280	0.34	-0.8
3,958,261	-		ABI39_RS15280	0.34	+0.0
3,958,288	+		ABI39_RS15280	0.35	-0.0
3,958,289	-		ABI39_RS15280	0.35	+0.4
3,958,289	-		ABI39_RS15280	0.35	-0.3
3,958,289	-		ABI39_RS15280	0.35	-1.5
3,958,289	-		ABI39_RS15280	0.35	-0.1
3,958,290	+		ABI39_RS15280	0.35	+0.6
3,958,385	-		ABI39_RS15280	0.40	+1.3