Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11090

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; filtered 1 mg/ml (C)
2,967,236	+		ABI39_RS22045	0.45	+0.0
2,967,268	-		ABI39_RS22045	0.48	-0.1
2,967,289	+		ABI39_RS22045	0.50	+0.5
2,967,293	+		ABI39_RS22045	0.51	-2.6
2,967,408	+		ABI39_RS22045	0.62	-0.8
2,967,412	+		ABI39_RS22045	0.63	-0.7
2,967,512	+		ABI39_RS22045	0.73	-0.5
2,967,513	-		ABI39_RS22045	0.73	+0.4
2,967,530	+		ABI39_RS22045	0.75	+1.0
2,967,574	+		ABI39_RS22045	0.79	-1.0
2,967,618	+		ABI39_RS22045	0.84	+0.0
2,967,618	+		ABI39_RS22045	0.84	-0.5
2,967,767	+				+0.4
2,968,000	-				+0.7
2,968,090	+				+1.1
2,968,090	+				+0.3
2,968,123	-				-2.0
2,968,247	+				+0.1
2,968,290	-		ABI39_RS11090	0.14	+1.4
2,968,354	-		ABI39_RS11090	0.21	+1.1
2,968,428	-		ABI39_RS11090	0.30	+1.0
2,968,513	+		ABI39_RS11090	0.39	-0.2
2,968,518	-		ABI39_RS11090	0.40	+0.0
2,968,585	-		ABI39_RS11090	0.47	-2.0
2,968,611	-		ABI39_RS11090	0.50	+0.2
2,968,611	-		ABI39_RS11090	0.50	+0.8
2,968,611	-		ABI39_RS11090	0.50	+1.8
2,968,611	-		ABI39_RS11090	0.50	-0.7
2,968,619	-		ABI39_RS11090	0.51	+1.1
2,968,630	+		ABI39_RS11090	0.52	+0.2
2,968,634	+		ABI39_RS11090	0.52	+0.3
2,968,634	+		ABI39_RS11090	0.52	+0.9
2,968,634	+		ABI39_RS11090	0.52	-0.9
2,968,635	-		ABI39_RS11090	0.53	+1.1
2,968,635	-		ABI39_RS11090	0.53	+1.0
2,968,635	-		ABI39_RS11090	0.53	+0.3
2,968,636	+		ABI39_RS11090	0.53	-1.0
2,968,636	+		ABI39_RS11090	0.53	+0.3
2,968,964	+		ABI39_RS11090	0.89	-0.3
2,969,024	+				+0.9
2,969,025	-				+1.4
2,969,089	+				+0.7
2,969,133	-		ABI39_RS11095	0.15	-0.2
2,969,266	+		ABI39_RS11095	0.44	+0.8
2,969,334	+		ABI39_RS11095	0.58	-3.6
2,969,433	+		ABI39_RS11095	0.80	+0.2
2,969,521	-				+0.3
2,969,539	-				-1.2
2,969,542	+				+0.3
2,969,713	-		ABI39_RS11100	0.27	+0.4
2,969,731	-		ABI39_RS11100	0.30	+0.8
2,969,806	-		ABI39_RS11100	0.41	+1.4
2,969,835	+		ABI39_RS11100	0.46	-0.0
2,969,862	+		ABI39_RS11100	0.50	+0.1
2,969,870	+		ABI39_RS11100	0.51	+0.8
2,969,871	-		ABI39_RS11100	0.51	+1.8