Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05940

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; filtered 1 mg/ml (C)
1,649,759	-		ABI39_RS05935	0.54	+0.6
1,649,930	-		ABI39_RS05935	0.62	-1.7
1,650,164	-		ABI39_RS05935	0.73	+0.6
1,650,167	-		ABI39_RS05935	0.74	+0.7
1,650,238	+		ABI39_RS05935	0.77	+1.0
1,650,238	+		ABI39_RS05935	0.77	-0.4
1,650,239	-		ABI39_RS05935	0.77	+0.2
1,650,242	+		ABI39_RS05935	0.77	-0.2
1,650,243	-		ABI39_RS05935	0.77	-0.3
1,650,243	-		ABI39_RS05935	0.77	-1.1
1,650,347	-		ABI39_RS05935	0.82	-0.4
1,650,560	-				+1.1
1,650,564	-				+0.9
1,650,564	-				-0.1
1,650,595	+				-0.4
1,650,619	-				-0.2
1,650,893	+		ABI39_RS05940	0.10	-1.1
1,650,894	-		ABI39_RS05940	0.11	+0.7
1,650,917	-		ABI39_RS05940	0.12	-1.9
1,650,959	+		ABI39_RS05940	0.15	+1.0
1,650,960	-		ABI39_RS05940	0.15	-0.1
1,651,028	+		ABI39_RS05940	0.20	+0.5
1,651,117	+		ABI39_RS05940	0.27	-0.4
1,651,291	+		ABI39_RS05940	0.39	+1.3
1,651,299	-		ABI39_RS05940	0.40	+0.6
1,651,398	+		ABI39_RS05940	0.47	+0.3
1,651,398	+		ABI39_RS05940	0.47	+0.5
1,651,398	+		ABI39_RS05940	0.47	+0.2
1,651,399	-		ABI39_RS05940	0.47	+0.2
1,651,399	-		ABI39_RS05940	0.47	+0.4
1,651,399	-		ABI39_RS05940	0.47	+0.1
1,651,449	-		ABI39_RS05940	0.51	-0.7
1,651,505	+		ABI39_RS05940	0.55	+0.1
1,651,505	+		ABI39_RS05940	0.55	+0.5
1,651,505	+		ABI39_RS05940	0.55	+0.3
1,651,551	-		ABI39_RS05940	0.58	-0.0
1,651,577	+		ABI39_RS05940	0.60	+1.1
1,651,586	+		ABI39_RS05940	0.61	+0.3
1,651,588	+		ABI39_RS05940	0.61	+0.1
1,651,588	+		ABI39_RS05940	0.61	+0.5
1,651,588	+		ABI39_RS05940	0.61	+0.7
1,651,589	-		ABI39_RS05940	0.61	+0.4
1,651,716	-		ABI39_RS05940	0.70	+0.5
1,651,838	-		ABI39_RS05940	0.79	-0.1
1,651,915	-		ABI39_RS05940	0.85	+0.3
1,651,966	+		ABI39_RS05940	0.89	-0.1
1,651,996	+				+1.0
1,652,351	-				-0.3
1,652,351	-				-0.4