Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03100 and ABI39_RS03105 overlap by 11 nucleotides ABI39_RS03105 and ABI39_RS03110 are separated by 160 nucleotides ABI39_RS03110 and ABI39_RS03115 are separated by 83 nucleotides
ABI39_RS03100: ABI39_RS03100 - relaxase/mobilization nuclease domain-containing protein, at 907,701 to 908,639
_RS03100
ABI39_RS03105: ABI39_RS03105 - MobC family plasmid mobilization relaxosome protein, at 908,629 to 908,937
_RS03105
ABI39_RS03110: ABI39_RS03110 - hypothetical protein, at 909,098 to 910,150
_RS03110
ABI39_RS03115: ABI39_RS03115 - DUF3987 domain-containing protein, at 910,234 to 911,601
_RS03115
Position (kb) 909
910
911 Strain fitness (log2 ratio) -1
0
1 at 908.132 kb on + strand, within ABI39_RS03100 at 908.400 kb on + strand, within ABI39_RS03100 at 908.460 kb on + strand, within ABI39_RS03100 at 908.460 kb on + strand, within ABI39_RS03100 at 908.461 kb on - strand, within ABI39_RS03100 at 908.631 kb on - strand at 908.839 kb on + strand, within ABI39_RS03105 at 909.982 kb on - strand, within ABI39_RS03110 at 910.174 kb on + strand at 910.446 kb on + strand, within ABI39_RS03115
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 908,132 + ABI39_RS03100 0.46 -0.2 908,400 + ABI39_RS03100 0.74 -0.5 908,460 + ABI39_RS03100 0.81 +0.4 908,460 + ABI39_RS03100 0.81 -0.5 908,461 - ABI39_RS03100 0.81 -0.2 908,631 - -0.7 908,839 + ABI39_RS03105 0.68 -0.8 909,982 - ABI39_RS03110 0.84 -0.8 910,174 + +0.1 910,446 + ABI39_RS03115 0.15 -0.9
Or see this region's nucleotide sequence