Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS23010

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; filtered 1 mg/ml (C)
2,001,522	-		ABI39_RS07285	0.73	+1.3
2,001,710	+		ABI39_RS07285	0.88	-0.2
2,001,711	-		ABI39_RS07285	0.89	+0.7
2,001,723	-		ABI39_RS07285	0.90	+0.1
2,001,846	+				+0.8
2,001,853	-				+0.2
2,002,014	+		ABI39_RS07290	0.52	+1.1
2,002,014	+		ABI39_RS07290	0.52	+0.6
2,002,165	+				-0.2
2,002,166	-				-0.1
2,002,211	-				+0.9
2,002,258	+				+0.4
2,002,438	+		ABI39_RS23010	0.11	-0.1
2,002,572	-		ABI39_RS23010	0.25	-1.1
2,002,639	-		ABI39_RS23010	0.32	-0.2
2,002,709	+		ABI39_RS23010	0.40	-0.4
2,002,710	-		ABI39_RS23010	0.40	-0.7
2,002,710	-		ABI39_RS23010	0.40	-0.9
2,002,886	-		ABI39_RS23010	0.58	+0.3
2,002,960	+		ABI39_RS23010	0.66	-0.9
2,003,085	-		ABI39_RS23010	0.80	-0.2
2,003,119	+		ABI39_RS23010	0.83	-1.2
2,003,120	-		ABI39_RS23010	0.83	-0.2
2,003,277	-				-0.1
2,003,283	-				+0.2
2,003,416	-				-0.1
2,003,463	-		ABI39_RS07300	0.13	-0.3
2,003,540	-		ABI39_RS07300	0.19	-0.1
2,003,561	+		ABI39_RS07300	0.21	+0.9
2,003,600	+		ABI39_RS07300	0.24	+0.1
2,003,654	-		ABI39_RS07300	0.28	+0.3
2,003,654	-		ABI39_RS07300	0.28	-0.3
2,003,654	-		ABI39_RS07300	0.28	-1.9
2,003,719	+		ABI39_RS07300	0.33	-0.3
2,003,759	-		ABI39_RS07300	0.36	+0.7
2,003,773	+		ABI39_RS07300	0.37	+0.4
2,003,774	-		ABI39_RS07300	0.37	+0.3
2,003,779	+		ABI39_RS07300	0.37	+0.0
2,003,779	+		ABI39_RS07300	0.37	+0.1
2,003,781	+		ABI39_RS07300	0.37	+0.7
2,003,781	+		ABI39_RS07300	0.37	+0.8
2,003,782	-		ABI39_RS07300	0.37	-1.2
2,003,857	-		ABI39_RS07300	0.43	+0.3
2,003,857	-		ABI39_RS07300	0.43	+0.1
2,003,862	-		ABI39_RS07300	0.43	+1.0
2,003,874	+		ABI39_RS07300	0.44	-0.6
2,003,877	+		ABI39_RS07300	0.44	-0.5
2,004,029	+		ABI39_RS07300	0.56	-0.6
2,004,030	-		ABI39_RS07300	0.56	-0.5
2,004,157	+		ABI39_RS07300	0.65	-1.0
2,004,161	+		ABI39_RS07300	0.66	+0.4
2,004,161	+		ABI39_RS07300	0.66	-0.4
2,004,163	+		ABI39_RS07300	0.66	-0.7
2,004,214	+		ABI39_RS07300	0.70	-1.6