Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15100

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; filtered 1 mg/ml (C)
3,918,619	+		ABI39_RS15095	0.76	+0.3
3,918,639	+		ABI39_RS15095	0.77	+0.4
3,918,640	-		ABI39_RS15095	0.77	-0.6
3,918,640	-		ABI39_RS15095	0.77	+0.1
3,918,644	+		ABI39_RS15095	0.77	+0.4
3,918,644	+		ABI39_RS15095	0.77	+0.0
3,918,644	+		ABI39_RS15095	0.77	+0.1
3,918,645	-		ABI39_RS15095	0.77	-1.3
3,918,649	-		ABI39_RS15095	0.77	+1.1
3,918,677	-		ABI39_RS15095	0.78	-0.9
3,918,754	+		ABI39_RS15095	0.81	-0.1
3,918,755	-		ABI39_RS15095	0.81	+0.0
3,918,755	-		ABI39_RS15095	0.81	+0.7
3,918,950	+		ABI39_RS15095	0.88	-1.3
3,919,106	-				+0.0
3,919,265	+				-1.6
3,919,268	+				-0.2
3,919,269	-				+0.6
3,919,269	-				-0.1
3,919,285	-				+0.4
3,919,286	+				+0.2
3,919,304	+				-0.9
3,919,389	+				+0.6
3,919,599	-				-0.2
3,919,601	+				-1.6
3,919,601	+				-0.1
3,919,679	-				-0.2
3,919,742	+				-0.8
3,919,963	+		ABI39_RS15100	0.15	+0.4
3,920,014	+		ABI39_RS15100	0.16	-1.1
3,920,016	+		ABI39_RS15100	0.16	+0.4
3,920,016	+		ABI39_RS15100	0.16	-1.2
3,920,016	+		ABI39_RS15100	0.16	-1.4
3,920,016	+		ABI39_RS15100	0.16	-1.1
3,920,017	-		ABI39_RS15100	0.16	+0.4
3,920,027	-		ABI39_RS15100	0.17	+1.0
3,920,120	-		ABI39_RS15100	0.20	-0.1
3,920,308	-		ABI39_RS15100	0.27	-0.7
3,920,344	-		ABI39_RS15100	0.28	-0.5
3,920,399	+		ABI39_RS15100	0.30	+0.3
3,920,436	-		ABI39_RS15100	0.31	-1.0
3,920,456	+		ABI39_RS15100	0.32	+0.3
3,920,520	+		ABI39_RS15100	0.34	-0.8
3,920,678	+		ABI39_RS15100	0.40	+0.2
3,920,678	+		ABI39_RS15100	0.40	+0.6
3,920,754	+		ABI39_RS15100	0.42	+1.0
3,920,937	-		ABI39_RS15100	0.49	-0.3
3,920,977	-		ABI39_RS15100	0.50	+0.7
3,921,094	-		ABI39_RS15100	0.54	-0.2
3,921,102	+		ABI39_RS15100	0.55	-2.2
3,921,103	-		ABI39_RS15100	0.55	+0.1
3,921,142	-		ABI39_RS15100	0.56	-0.9
3,921,157	+		ABI39_RS15100	0.56	-0.2
3,921,158	-		ABI39_RS15100	0.56	-0.6
3,921,158	-		ABI39_RS15100	0.56	-0.2
3,921,437	+		ABI39_RS15100	0.66	+0.1
3,921,485	-		ABI39_RS15100	0.68	+0.2
3,921,509	+		ABI39_RS15100	0.69	-1.0
3,921,532	+		ABI39_RS15100	0.70	-0.2
3,921,554	-		ABI39_RS15100	0.70	-0.1
3,921,574	+		ABI39_RS15100	0.71	-2.9
3,921,663	+		ABI39_RS15100	0.74	+0.5
3,921,663	+		ABI39_RS15100	0.74	-0.2
3,922,148	+				-1.1
3,922,149	-				+0.5
3,922,167	+				-0.3
3,922,167	+				-0.4
3,922,168	-				-0.9
3,922,169	+				+0.7
3,922,171	+				+0.7
3,922,172	-				-0.8
3,922,180	+				+0.1
3,922,180	+				+0.3
3,922,360	-				+0.3
3,922,406	+				+0.1
3,922,408	+				+0.2
3,922,408	+				+1.4
3,922,538	+		ABI39_RS15105	0.16	-0.4
3,922,591	+		ABI39_RS15105	0.25	-1.0
3,922,607	+		ABI39_RS15105	0.27	-1.1
3,922,607	+		ABI39_RS15105	0.27	+0.6
3,922,608	-		ABI39_RS15105	0.27	-1.2
3,922,608	-		ABI39_RS15105	0.27	-0.2
3,922,625	-		ABI39_RS15105	0.30	-1.9
3,922,647	+		ABI39_RS15105	0.33	-0.2
3,922,654	+		ABI39_RS15105	0.35	-0.3
3,922,711	+		ABI39_RS15105	0.44	-0.0
3,922,718	-		ABI39_RS15105	0.45	+0.4
3,922,735	-		ABI39_RS15105	0.47	-0.8
3,922,780	+		ABI39_RS15105	0.54	-0.5
3,922,781	-		ABI39_RS15105	0.54	-0.7
3,922,990	+		ABI39_RS15105	0.87	+0.4
3,923,091	-				-0.1
3,923,112	-				+0.8
3,923,250	+		ABI39_RS15110	0.25	+0.8
3,923,251	-		ABI39_RS15110	0.25	+0.6
3,923,321	-		ABI39_RS15110	0.37	+0.1