Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02115 and ABI39_RS02120 are separated by 101 nucleotides ABI39_RS02120 and ABI39_RS02125 are separated by 286 nucleotides ABI39_RS02125 and ABI39_RS02130 are separated by 64 nucleotides
ABI39_RS02115: ABI39_RS02115 - response regulator, at 620,039 to 622,606
_RS02115
ABI39_RS02120: ABI39_RS02120 - sigma-54-dependent Fis family transcriptional regulator, at 622,708 to 624,090
_RS02120
ABI39_RS02125: ABI39_RS02125 - hypothetical protein, at 624,377 to 624,682
_RS02125
ABI39_RS02130: ABI39_RS02130 - RNA pseudouridine synthase, at 624,747 to 625,418
_RS02130
Position (kb) 622
623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 621.865 kb on - strand, within ABI39_RS02115 at 621.981 kb on + strand, within ABI39_RS02115 at 622.410 kb on + strand at 622.634 kb on + strand at 622.727 kb on + strand at 622.730 kb on + strand at 622.754 kb on - strand at 622.924 kb on + strand, within ABI39_RS02120 at 622.976 kb on + strand, within ABI39_RS02120 at 622.985 kb on + strand, within ABI39_RS02120 at 622.986 kb on - strand, within ABI39_RS02120 at 623.207 kb on - strand, within ABI39_RS02120 at 623.213 kb on - strand, within ABI39_RS02120 at 623.274 kb on + strand, within ABI39_RS02120 at 623.282 kb on - strand, within ABI39_RS02120 at 623.296 kb on - strand, within ABI39_RS02120 at 623.339 kb on + strand, within ABI39_RS02120 at 623.486 kb on + strand, within ABI39_RS02120 at 623.505 kb on - strand, within ABI39_RS02120 at 623.505 kb on - strand, within ABI39_RS02120 at 623.571 kb on - strand, within ABI39_RS02120 at 623.655 kb on + strand, within ABI39_RS02120 at 623.676 kb on + strand, within ABI39_RS02120 at 623.687 kb on + strand, within ABI39_RS02120 at 623.768 kb on + strand, within ABI39_RS02120 at 623.881 kb on - strand, within ABI39_RS02120 at 623.979 kb on + strand at 624.059 kb on - strand at 624.109 kb on - strand at 624.165 kb on - strand at 624.166 kb on + strand at 624.167 kb on - strand at 624.167 kb on - strand at 624.281 kb on - strand at 624.329 kb on - strand at 624.353 kb on + strand at 624.362 kb on + strand at 624.473 kb on - strand, within ABI39_RS02125 at 624.838 kb on - strand, within ABI39_RS02130 at 625.023 kb on + strand, within ABI39_RS02130 at 625.044 kb on + strand, within ABI39_RS02130 at 625.063 kb on + strand, within ABI39_RS02130 at 625.063 kb on + strand, within ABI39_RS02130 at 625.070 kb on + strand, within ABI39_RS02130 at 625.070 kb on + strand, within ABI39_RS02130
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 621,865 - ABI39_RS02115 0.71 +0.1 621,981 + ABI39_RS02115 0.76 -0.9 622,410 + -3.5 622,634 + -2.6 622,727 + -0.2 622,730 + +0.9 622,754 - -0.4 622,924 + ABI39_RS02120 0.16 -0.6 622,976 + ABI39_RS02120 0.19 +0.2 622,985 + ABI39_RS02120 0.20 -0.0 622,986 - ABI39_RS02120 0.20 -0.3 623,207 - ABI39_RS02120 0.36 +0.5 623,213 - ABI39_RS02120 0.37 +0.4 623,274 + ABI39_RS02120 0.41 -0.9 623,282 - ABI39_RS02120 0.42 -0.4 623,296 - ABI39_RS02120 0.43 -0.1 623,339 + ABI39_RS02120 0.46 -0.3 623,486 + ABI39_RS02120 0.56 -0.2 623,505 - ABI39_RS02120 0.58 +0.6 623,505 - ABI39_RS02120 0.58 +0.1 623,571 - ABI39_RS02120 0.62 +0.1 623,655 + ABI39_RS02120 0.68 +0.3 623,676 + ABI39_RS02120 0.70 -0.1 623,687 + ABI39_RS02120 0.71 +0.5 623,768 + ABI39_RS02120 0.77 -0.1 623,881 - ABI39_RS02120 0.85 +0.3 623,979 + -0.5 624,059 - +0.5 624,109 - -0.3 624,165 - +0.4 624,166 + -0.0 624,167 - +0.3 624,167 - +2.0 624,281 - +0.2 624,329 - +0.2 624,353 + -0.3 624,362 + +0.2 624,473 - ABI39_RS02125 0.31 +1.1 624,838 - ABI39_RS02130 0.14 -0.8 625,023 + ABI39_RS02130 0.41 +0.3 625,044 + ABI39_RS02130 0.44 -1.8 625,063 + ABI39_RS02130 0.47 -0.5 625,063 + ABI39_RS02130 0.47 -0.4 625,070 + ABI39_RS02130 0.48 -1.9 625,070 + ABI39_RS02130 0.48 +0.1
Or see this region's nucleotide sequence