Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00590 and ABI39_RS00595 are separated by 113 nucleotides ABI39_RS00595 and ABI39_RS00600 are separated by 39 nucleotides
ABI39_RS00590: ABI39_RS00590 - glycoside hydrolase family 127 protein, at 166,931 to 168,853
_RS00590
ABI39_RS00595: ABI39_RS00595 - alpha/beta hydrolase, at 168,967 to 169,872
_RS00595
ABI39_RS00600: ABI39_RS00600 - glycoside hydrolase, at 169,912 to 171,546
_RS00600
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1 at 167.980 kb on - strand, within ABI39_RS00590 at 167.983 kb on + strand, within ABI39_RS00590 at 168.076 kb on + strand, within ABI39_RS00590 at 168.288 kb on - strand, within ABI39_RS00590 at 168.332 kb on + strand, within ABI39_RS00590 at 168.428 kb on + strand, within ABI39_RS00590 at 168.623 kb on + strand, within ABI39_RS00590 at 168.623 kb on + strand, within ABI39_RS00590 at 168.836 kb on - strand at 168.853 kb on + strand at 168.854 kb on - strand at 168.904 kb on - strand at 168.935 kb on + strand at 168.969 kb on - strand at 169.026 kb on + strand at 169.196 kb on - strand, within ABI39_RS00595 at 169.216 kb on + strand, within ABI39_RS00595 at 169.455 kb on + strand, within ABI39_RS00595 at 169.514 kb on - strand, within ABI39_RS00595 at 169.576 kb on - strand, within ABI39_RS00595 at 169.635 kb on + strand, within ABI39_RS00595 at 169.636 kb on - strand, within ABI39_RS00595 at 169.814 kb on - strand at 169.948 kb on + strand at 169.948 kb on + strand at 169.948 kb on + strand at 169.948 kb on + strand at 169.948 kb on + strand at 169.949 kb on - strand at 169.950 kb on + strand at 169.950 kb on + strand at 170.079 kb on - strand, within ABI39_RS00600 at 170.089 kb on + strand, within ABI39_RS00600 at 170.090 kb on - strand, within ABI39_RS00600 at 170.095 kb on - strand, within ABI39_RS00600 at 170.164 kb on + strand, within ABI39_RS00600 at 170.289 kb on + strand, within ABI39_RS00600 at 170.312 kb on - strand, within ABI39_RS00600 at 170.382 kb on + strand, within ABI39_RS00600 at 170.473 kb on + strand, within ABI39_RS00600 at 170.493 kb on + strand, within ABI39_RS00600 at 170.507 kb on + strand, within ABI39_RS00600 at 170.547 kb on + strand, within ABI39_RS00600 at 170.559 kb on + strand, within ABI39_RS00600 at 170.560 kb on - strand, within ABI39_RS00600 at 170.599 kb on - strand, within ABI39_RS00600 at 170.632 kb on - strand, within ABI39_RS00600 at 170.650 kb on + strand, within ABI39_RS00600 at 170.650 kb on + strand, within ABI39_RS00600 at 170.721 kb on + strand, within ABI39_RS00600 at 170.722 kb on - strand, within ABI39_RS00600 at 170.722 kb on - strand, within ABI39_RS00600 at 170.722 kb on - strand, within ABI39_RS00600 at 170.727 kb on + strand, within ABI39_RS00600 at 170.820 kb on + strand, within ABI39_RS00600 at 170.838 kb on + strand, within ABI39_RS00600 at 170.839 kb on - strand, within ABI39_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 167,980 - ABI39_RS00590 0.55 +0.5 167,983 + ABI39_RS00590 0.55 +0.2 168,076 + ABI39_RS00590 0.60 -0.1 168,288 - ABI39_RS00590 0.71 +0.6 168,332 + ABI39_RS00590 0.73 -0.6 168,428 + ABI39_RS00590 0.78 -0.4 168,623 + ABI39_RS00590 0.88 +0.1 168,623 + ABI39_RS00590 0.88 +0.0 168,836 - -0.1 168,853 + +0.4 168,854 - +0.2 168,904 - +1.4 168,935 + +0.2 168,969 - -0.2 169,026 + -0.5 169,196 - ABI39_RS00595 0.25 +0.1 169,216 + ABI39_RS00595 0.27 -1.0 169,455 + ABI39_RS00595 0.54 +0.9 169,514 - ABI39_RS00595 0.60 -0.7 169,576 - ABI39_RS00595 0.67 -0.3 169,635 + ABI39_RS00595 0.74 -0.1 169,636 - ABI39_RS00595 0.74 -0.7 169,814 - +0.1 169,948 + -1.0 169,948 + -0.3 169,948 + -0.0 169,948 + -0.3 169,948 + +0.8 169,949 - -0.5 169,950 + -0.8 169,950 + +0.4 170,079 - ABI39_RS00600 0.10 +0.2 170,089 + ABI39_RS00600 0.11 +0.8 170,090 - ABI39_RS00600 0.11 -0.6 170,095 - ABI39_RS00600 0.11 -0.0 170,164 + ABI39_RS00600 0.15 +0.2 170,289 + ABI39_RS00600 0.23 +0.3 170,312 - ABI39_RS00600 0.24 +0.4 170,382 + ABI39_RS00600 0.29 -0.0 170,473 + ABI39_RS00600 0.34 +0.1 170,493 + ABI39_RS00600 0.36 -0.3 170,507 + ABI39_RS00600 0.36 -0.2 170,547 + ABI39_RS00600 0.39 +1.2 170,559 + ABI39_RS00600 0.40 -0.3 170,560 - ABI39_RS00600 0.40 -0.2 170,599 - ABI39_RS00600 0.42 +0.4 170,632 - ABI39_RS00600 0.44 -0.0 170,650 + ABI39_RS00600 0.45 -0.7 170,650 + ABI39_RS00600 0.45 -1.1 170,721 + ABI39_RS00600 0.49 +0.8 170,722 - ABI39_RS00600 0.50 +0.0 170,722 - ABI39_RS00600 0.50 -0.4 170,722 - ABI39_RS00600 0.50 +0.2 170,727 + ABI39_RS00600 0.50 -0.4 170,820 + ABI39_RS00600 0.56 -0.1 170,838 + ABI39_RS00600 0.57 -0.8 170,839 - ABI39_RS00600 0.57 -0.6
Or see this region's nucleotide sequence