Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07490

Experiment: Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
2,038,547	+		ABI39_RS07480	0.87	-0.8
2,038,735	-				+0.5
2,038,788	-				+0.4
2,038,802	-				+0.4
2,038,845	+				+0.6
2,038,857	+				-0.6
2,038,859	+				-0.1
2,038,859	+				-0.0
2,039,016	+		ABI39_RS07485	0.27	-0.2
2,039,113	+		ABI39_RS07485	0.43	-0.2
2,039,150	-		ABI39_RS07485	0.49	-1.5
2,039,150	-		ABI39_RS07485	0.49	-0.0
2,039,180	-		ABI39_RS07485	0.54	+0.6
2,039,184	+		ABI39_RS07485	0.54	-0.1
2,039,331	+		ABI39_RS07485	0.78	-2.0
2,039,331	+		ABI39_RS07485	0.78	+0.3
2,039,420	-				-0.1
2,039,521	+		ABI39_RS07490	0.11	-0.1
2,039,524	+		ABI39_RS07490	0.11	+0.7
2,039,525	-		ABI39_RS07490	0.11	+0.3
2,039,547	-		ABI39_RS07490	0.13	+0.7
2,039,552	+		ABI39_RS07490	0.14	-0.0
2,039,600	-		ABI39_RS07490	0.19	-0.2
2,039,601	+		ABI39_RS07490	0.19	-0.4
2,039,603	+		ABI39_RS07490	0.19	-0.1
2,039,604	-		ABI39_RS07490	0.19	-1.1
2,039,642	+		ABI39_RS07490	0.23	+0.9
2,039,714	+		ABI39_RS07490	0.31	+0.3
2,039,715	-		ABI39_RS07490	0.31	+0.2
2,039,716	+		ABI39_RS07490	0.31	+1.1
2,039,775	+		ABI39_RS07490	0.37	+1.2
2,039,807	+		ABI39_RS07490	0.40	+1.0
2,039,812	+		ABI39_RS07490	0.41	+0.3
2,039,812	+		ABI39_RS07490	0.41	+0.3
2,039,812	+		ABI39_RS07490	0.41	+1.1
2,039,887	-		ABI39_RS07490	0.49	-0.3
2,039,889	-		ABI39_RS07490	0.49	+0.1
2,039,908	+		ABI39_RS07490	0.51	+0.3
2,039,955	-		ABI39_RS07490	0.56	-0.0
2,039,997	+		ABI39_RS07490	0.60	-0.4
2,040,005	+		ABI39_RS07490	0.61	-0.2
2,040,030	+		ABI39_RS07490	0.64	-0.9
2,040,206	+		ABI39_RS07490	0.82	-0.1
2,040,273	+		ABI39_RS07490	0.89	-0.0
2,040,328	+				+0.2
2,040,348	+				-0.6
2,040,349	-				+0.2
2,040,349	-				-0.0
2,040,349	-				+0.3
2,040,360	-				+0.2
2,040,402	-				+0.8
2,040,403	+				-0.2
2,040,404	-				-1.3
2,040,404	-				+0.2
2,040,405	+				+0.2
2,040,406	-				+0.8
2,040,468	+		ABI39_RS21875	0.10	-0.1
2,040,511	-		ABI39_RS21875	0.14	+0.4
2,040,620	-		ABI39_RS21875	0.24	+0.0
2,040,637	+		ABI39_RS21875	0.25	+0.0
2,040,803	-		ABI39_RS21875	0.41	-0.5
2,040,820	-		ABI39_RS21875	0.42	+0.4
2,040,861	+		ABI39_RS21875	0.46	+0.0
2,040,862	-		ABI39_RS21875	0.46	-2.3
2,040,899	-		ABI39_RS21875	0.49	+0.2
2,040,899	-		ABI39_RS21875	0.49	-0.1
2,040,899	-		ABI39_RS21875	0.49	+1.1
2,040,899	-		ABI39_RS21875	0.49	+0.7
2,040,966	+		ABI39_RS21875	0.56	-0.1
2,040,966	+		ABI39_RS21875	0.56	+0.0
2,041,121	+		ABI39_RS21875	0.70	+0.4
2,041,179	+		ABI39_RS21875	0.75	+0.1
2,041,186	+		ABI39_RS21875	0.76	-0.5
2,041,319	-		ABI39_RS21875	0.88	+0.1
2,041,341	-		ABI39_RS21875	0.90	-0.7
2,041,341	-		ABI39_RS21875	0.90	+0.8