Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18455

Experiment: Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C)
4,655,118	+				-0.6
4,655,141	-				-0.6
4,655,141	-				-2.2
4,655,154	+				+1.4
4,655,232	+				+0.1
4,655,900	+				-3.1
4,655,902	+				-0.4
4,655,902	+				+0.1
4,655,903	-				-1.8
4,655,903	-				+0.9
4,655,903	-				+0.2
4,656,002	+				-0.1
4,656,003	-				-2.2
4,656,003	-				-0.3
4,656,014	-				+0.3
4,656,051	+				-0.2
4,656,053	+				-1.2
4,656,054	-				+0.6
4,656,054	-				+0.3
4,656,054	-				-0.9
4,656,076	+				+0.2
4,656,175	+		ABI39_RS18455	0.14	-0.9
4,656,176	-		ABI39_RS18455	0.14	-0.3
4,656,300	+		ABI39_RS18455	0.43	+0.2
4,656,302	+		ABI39_RS18455	0.43	+0.0
4,656,303	-		ABI39_RS18455	0.44	-0.4
4,656,303	-		ABI39_RS18455	0.44	-0.8
4,656,320	+		ABI39_RS18455	0.48	-0.2
4,656,323	+		ABI39_RS18455	0.48	+0.2
4,656,353	+		ABI39_RS18455	0.55	-0.0
4,656,353	+		ABI39_RS18455	0.55	-0.6
4,656,354	-		ABI39_RS18455	0.56	-0.8
4,656,355	+		ABI39_RS18455	0.56	-0.1
4,656,376	-		ABI39_RS18455	0.61	-2.3
4,656,383	-		ABI39_RS18455	0.62	+0.1
4,656,436	+		ABI39_RS18455	0.75	-0.2
4,656,465	+		ABI39_RS18455	0.82	+0.4
4,656,492	-		ABI39_RS18455	0.88	-0.7
4,656,622	+		ABI39_RS22435	0.13	+0.2
4,656,625	+		ABI39_RS22435	0.14	-0.5
4,656,658	+		ABI39_RS22435	0.20	+0.3
4,656,700	+		ABI39_RS22435	0.28	-0.8
4,656,701	-		ABI39_RS22435	0.28	-0.5
4,656,702	+		ABI39_RS22435	0.28	+0.1
4,656,705	+		ABI39_RS22435	0.28	-0.6
4,656,731	-		ABI39_RS22435	0.33	-0.8
4,656,736	-		ABI39_RS22435	0.34	-0.6
4,656,736	-		ABI39_RS22435	0.34	-1.1
4,656,739	+		ABI39_RS22435	0.35	+0.8
4,656,739	+		ABI39_RS22435	0.35	-0.4
4,656,782	+		ABI39_RS22435	0.42	+0.3
4,656,782	+		ABI39_RS22435	0.42	+0.7
4,656,783	-		ABI39_RS22435	0.43	+0.0
4,656,783	-		ABI39_RS22435	0.43	-1.3
4,656,783	-		ABI39_RS22435	0.43	-0.6
4,656,783	-		ABI39_RS22435	0.43	+0.8
4,656,831	+		ABI39_RS22435	0.51	-0.2
4,656,852	+		ABI39_RS22435	0.55	+0.4
4,656,872	-		ABI39_RS22435	0.59	-0.6
4,656,937	-		ABI39_RS22435	0.70	-0.2
4,656,978	+		ABI39_RS22435	0.78	-0.3
4,656,985	-		ABI39_RS22435	0.79	+1.3
4,657,057	+				-0.3
4,657,058	-				+0.1
4,657,193	-		ABI39_RS22855	0.44	-0.7
4,657,196	+		ABI39_RS22855	0.46	+0.4
4,657,361	+				-0.3
4,657,369	+				-0.2
4,657,403	-				+0.5
4,657,404	+				+0.4
4,657,453	+				+0.1
4,657,456	-				-0.9
4,657,456	-				+0.1
4,657,464	+				-0.6
4,657,464	+				-0.2
4,657,465	-				-0.3
4,657,465	-				-0.1
4,657,492	+				-0.3
4,657,493	-				-0.6