Experiment: Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03280 and ABI39_RS03290 are separated by 61 nucleotides ABI39_RS03290 and ABI39_RS03295 are separated by 43 nucleotides ABI39_RS03295 and ABI39_RS03300 are separated by 23 nucleotides
ABI39_RS03280: ABI39_RS03280 - DUF1016 family protein, at 949,299 to 950,400
_RS03280
ABI39_RS03290: ABI39_RS03290 - endonuclease/exonuclease/phosphatase family protein, at 950,462 to 951,307
_RS03290
ABI39_RS03295: ABI39_RS03295 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 951,351 to 953,120
_RS03295
ABI39_RS03300: ABI39_RS03300 - SusC/RagA family TonB-linked outer membrane protein, at 953,144 to 956,545
_RS03300
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1 at 950.401 kb on + strand at 950.658 kb on + strand, within ABI39_RS03290 at 950.687 kb on - strand, within ABI39_RS03290 at 950.819 kb on + strand, within ABI39_RS03290 at 950.852 kb on + strand, within ABI39_RS03290 at 950.963 kb on - strand, within ABI39_RS03290 at 950.982 kb on + strand, within ABI39_RS03290 at 950.983 kb on - strand, within ABI39_RS03290 at 951.418 kb on - strand at 951.494 kb on + strand at 951.700 kb on + strand, within ABI39_RS03295 at 951.700 kb on + strand, within ABI39_RS03295 at 952.054 kb on - strand, within ABI39_RS03295 at 952.215 kb on - strand, within ABI39_RS03295 at 952.237 kb on + strand, within ABI39_RS03295 at 952.437 kb on + strand, within ABI39_RS03295 at 952.520 kb on - strand, within ABI39_RS03295 at 952.539 kb on - strand, within ABI39_RS03295 at 952.580 kb on - strand, within ABI39_RS03295 at 952.604 kb on - strand, within ABI39_RS03295 at 952.607 kb on + strand, within ABI39_RS03295 at 952.639 kb on + strand, within ABI39_RS03295 at 952.639 kb on + strand, within ABI39_RS03295 at 952.738 kb on + strand, within ABI39_RS03295 at 952.739 kb on - strand, within ABI39_RS03295 at 952.838 kb on - strand, within ABI39_RS03295 at 952.838 kb on - strand, within ABI39_RS03295 at 952.838 kb on - strand, within ABI39_RS03295 at 952.841 kb on + strand, within ABI39_RS03295 at 952.970 kb on - strand at 953.176 kb on + strand at 953.285 kb on - strand at 953.395 kb on - strand at 953.395 kb on - strand at 953.486 kb on + strand, within ABI39_RS03300 at 953.494 kb on + strand, within ABI39_RS03300 at 953.496 kb on + strand, within ABI39_RS03300 at 953.496 kb on + strand, within ABI39_RS03300 at 953.615 kb on - strand, within ABI39_RS03300 at 953.764 kb on + strand, within ABI39_RS03300 at 953.764 kb on + strand, within ABI39_RS03300 at 953.777 kb on - strand, within ABI39_RS03300 at 953.777 kb on - strand, within ABI39_RS03300 at 953.854 kb on + strand, within ABI39_RS03300 at 953.857 kb on - strand, within ABI39_RS03300 at 953.962 kb on - strand, within ABI39_RS03300
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) remove 950,401 + +0.3 950,658 + ABI39_RS03290 0.23 -0.1 950,687 - ABI39_RS03290 0.27 -0.1 950,819 + ABI39_RS03290 0.42 +0.3 950,852 + ABI39_RS03290 0.46 -1.4 950,963 - ABI39_RS03290 0.59 +0.1 950,982 + ABI39_RS03290 0.61 +0.2 950,983 - ABI39_RS03290 0.62 -0.4 951,418 - -0.2 951,494 + -0.0 951,700 + ABI39_RS03295 0.20 +0.5 951,700 + ABI39_RS03295 0.20 -0.0 952,054 - ABI39_RS03295 0.40 +0.3 952,215 - ABI39_RS03295 0.49 -1.0 952,237 + ABI39_RS03295 0.50 +0.0 952,437 + ABI39_RS03295 0.61 -0.6 952,520 - ABI39_RS03295 0.66 +0.1 952,539 - ABI39_RS03295 0.67 -0.1 952,580 - ABI39_RS03295 0.69 -0.7 952,604 - ABI39_RS03295 0.71 -0.0 952,607 + ABI39_RS03295 0.71 -2.0 952,639 + ABI39_RS03295 0.73 -0.5 952,639 + ABI39_RS03295 0.73 -0.2 952,738 + ABI39_RS03295 0.78 -0.1 952,739 - ABI39_RS03295 0.78 -0.6 952,838 - ABI39_RS03295 0.84 +0.1 952,838 - ABI39_RS03295 0.84 -0.3 952,838 - ABI39_RS03295 0.84 +0.1 952,841 + ABI39_RS03295 0.84 -0.4 952,970 - +0.3 953,176 + +0.6 953,285 - -0.7 953,395 - -0.5 953,395 - -0.7 953,486 + ABI39_RS03300 0.10 -0.0 953,494 + ABI39_RS03300 0.10 -1.0 953,496 + ABI39_RS03300 0.10 +0.6 953,496 + ABI39_RS03300 0.10 +0.1 953,615 - ABI39_RS03300 0.14 +0.8 953,764 + ABI39_RS03300 0.18 -0.1 953,764 + ABI39_RS03300 0.18 +0.4 953,777 - ABI39_RS03300 0.19 +0.2 953,777 - ABI39_RS03300 0.19 -0.3 953,854 + ABI39_RS03300 0.21 +0.6 953,857 - ABI39_RS03300 0.21 -0.0 953,962 - ABI39_RS03300 0.24 -0.2
Or see this region's nucleotide sequence