Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20290

Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; filtered 2.5 mg/ml (C)
5,007,489	-		ABI39_RS20280	0.83	-0.9
5,007,585	+				+1.0
5,007,587	+				+0.6
5,007,588	-				+2.8
5,007,691	+				-1.8
5,007,692	-				+0.8
5,007,697	+				+0.8
5,007,700	+				+1.6
5,007,842	+		ABI39_RS20285	0.17	+0.5
5,007,951	+		ABI39_RS20285	0.32	+3.9
5,007,952	-		ABI39_RS20285	0.32	+1.2
5,008,005	+		ABI39_RS20285	0.39	+3.1
5,008,079	+		ABI39_RS20285	0.49	+2.3
5,008,086	-		ABI39_RS20285	0.50	+0.4
5,008,233	-		ABI39_RS20285	0.70	+2.7
5,008,233	-		ABI39_RS20285	0.70	+1.6
5,008,385	+				+1.7
5,008,420	+				+2.8
5,008,421	-				+1.1
5,008,424	+				+1.3
5,008,424	+				+2.7
5,008,425	-				+1.9
5,008,430	+				-0.8
5,008,430	+				+1.4
5,008,430	+				-0.1
5,008,474	+				-1.2
5,008,476	+				-0.2
5,008,488	+				+0.4
5,008,493	-				-2.0
5,008,498	+				+0.8
5,008,499	-				+0.0
5,008,499	-				+0.6
5,008,499	-				+0.3
5,008,501	-				+3.1
5,008,522	-				-1.0
5,008,544	-				-0.7
5,008,560	+				-0.7
5,008,628	-		ABI39_RS20290	0.14	+0.7
5,008,686	+		ABI39_RS20290	0.19	+1.0
5,008,686	+		ABI39_RS20290	0.19	+0.5
5,008,687	-		ABI39_RS20290	0.19	+0.6
5,008,691	-		ABI39_RS20290	0.19	+2.8
5,008,693	+		ABI39_RS20290	0.19	-0.4
5,008,693	+		ABI39_RS20290	0.19	+1.4
5,008,693	+		ABI39_RS20290	0.19	+1.0
5,008,707	-		ABI39_RS20290	0.20	-1.1
5,008,753	+		ABI39_RS20290	0.24	-0.4
5,008,822	-		ABI39_RS20290	0.30	+3.2
5,008,846	-		ABI39_RS20290	0.32	+0.5
5,008,902	+		ABI39_RS20290	0.36	+2.8
5,008,978	+		ABI39_RS20290	0.42	+0.6
5,008,993	+		ABI39_RS20290	0.44	-0.1
5,008,993	+		ABI39_RS20290	0.44	+0.0
5,008,994	-		ABI39_RS20290	0.44	+0.7
5,008,995	+		ABI39_RS20290	0.44	-0.8
5,008,995	+		ABI39_RS20290	0.44	+1.9
5,008,995	+		ABI39_RS20290	0.44	+0.3
5,009,019	+		ABI39_RS20290	0.46	+1.5
5,009,019	+		ABI39_RS20290	0.46	-0.8
5,009,022	+		ABI39_RS20290	0.46	+0.7
5,009,022	+		ABI39_RS20290	0.46	+0.8
5,009,046	-		ABI39_RS20290	0.48	-2.0
5,009,087	+		ABI39_RS20290	0.51	+3.3
5,009,129	-		ABI39_RS20290	0.54	+1.8
5,009,129	-		ABI39_RS20290	0.54	+3.5
5,009,132	-		ABI39_RS20290	0.55	-0.9
5,009,146	+		ABI39_RS20290	0.56	-0.4
5,009,198	-		ABI39_RS20290	0.60	+1.7
5,009,210	-		ABI39_RS20290	0.61	+0.9
5,009,252	+		ABI39_RS20290	0.64	+1.5
5,009,261	+		ABI39_RS20290	0.65	+1.2
5,009,287	+		ABI39_RS20290	0.67	+0.5
5,009,291	+		ABI39_RS20290	0.68	-0.8
5,009,312	+		ABI39_RS20290	0.69	+2.4
5,009,324	+		ABI39_RS20290	0.70	+1.1
5,009,337	-		ABI39_RS20290	0.71	+1.5
5,009,337	-		ABI39_RS20290	0.71	+0.7
5,009,339	-		ABI39_RS20290	0.71	+0.9
5,009,344	-		ABI39_RS20290	0.72	+1.8
5,009,357	-		ABI39_RS20290	0.73	+1.4
5,009,361	-		ABI39_RS20290	0.73	+1.4
5,009,443	-		ABI39_RS20290	0.80	+1.0
5,009,448	-		ABI39_RS20290	0.80	-2.2
5,009,459	-		ABI39_RS20290	0.81	+3.1
5,009,515	+		ABI39_RS20290	0.86	+2.0
5,009,531	+		ABI39_RS20290	0.87	+1.0
5,009,548	-		ABI39_RS20290	0.88	-1.1
5,009,548	-		ABI39_RS20290	0.88	+1.2
5,009,606	+				-1.5
5,009,610	+				+1.2
5,009,675	+				+1.9
5,009,686	+				-0.4
5,009,693	-				-0.6
5,009,743	+				+2.0
5,009,744	-				+2.2
5,009,744	-				+0.5
5,009,744	-				+0.7
5,009,841	+				+2.0
5,009,861	-		ABI39_RS20295	0.11	+1.0
5,009,942	+		ABI39_RS20295	0.21	+1.5
5,009,943	-		ABI39_RS20295	0.21	+0.1
5,009,956	+		ABI39_RS20295	0.22	+0.3
5,010,047	-		ABI39_RS20295	0.32	-0.7
5,010,073	-		ABI39_RS20295	0.35	+0.3
5,010,073	-		ABI39_RS20295	0.35	+0.0
5,010,109	+		ABI39_RS20295	0.39	+2.8
5,010,112	-		ABI39_RS20295	0.40	-1.6
5,010,170	-		ABI39_RS20295	0.46	+2.3
5,010,171	+		ABI39_RS20295	0.46	+0.0
5,010,174	+		ABI39_RS20295	0.47	+2.2
5,010,175	-		ABI39_RS20295	0.47	+1.2
5,010,176	+		ABI39_RS20295	0.47	+0.5
5,010,242	+		ABI39_RS20295	0.55	+1.9
5,010,300	-		ABI39_RS20295	0.61	-0.3
5,010,301	+		ABI39_RS20295	0.61	+2.4
5,010,370	+		ABI39_RS20295	0.69	+0.5
5,010,370	+		ABI39_RS20295	0.69	+2.1
5,010,454	+		ABI39_RS20295	0.79	+1.5
5,010,456	+		ABI39_RS20295	0.79	-0.1
5,010,459	-		ABI39_RS20295	0.79	+0.6
5,010,544	+		ABI39_RS20295	0.89	+0.0
5,010,604	+				+2.7
5,010,606	+				-0.4
5,010,607	-				+0.2
5,010,622	+				+1.2
5,010,637	-				-1.7
5,010,649	-				+0.0