Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07690

Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; filtered 2.5 mg/ml (C)
2,083,594	-				+0.2
2,083,624	+				-0.4
2,083,678	+				+0.7
2,083,679	-				+0.1
2,083,710	-				-0.3
2,083,710	-				-1.0
2,083,807	+		ABI39_RS22695	0.28	+0.0
2,083,807	+		ABI39_RS22695	0.28	+0.3
2,083,808	-		ABI39_RS22695	0.28	-0.5
2,083,840	-		ABI39_RS22695	0.37	+0.8
2,083,867	+		ABI39_RS22695	0.44	-1.3
2,083,888	+		ABI39_RS22695	0.49	-0.1
2,083,896	+		ABI39_RS22695	0.52	+3.7
2,083,897	-		ABI39_RS22695	0.52	-0.3
2,084,111	-				-1.1
2,084,126	+				-0.1
2,084,223	+		ABI39_RS21905	0.27	-0.5
2,084,224	-		ABI39_RS21905	0.27	+1.6
2,084,281	+		ABI39_RS21905	0.40	+0.3
2,084,295	-		ABI39_RS21905	0.43	+0.9
2,084,296	+		ABI39_RS21905	0.43	-0.3
2,084,297	-		ABI39_RS21905	0.43	-0.5
2,084,393	+		ABI39_RS21905	0.64	-0.1
2,084,415	-		ABI39_RS21905	0.68	-0.6
2,084,415	-		ABI39_RS21905	0.68	-0.4
2,084,470	+		ABI39_RS21905	0.80	+0.3
2,084,499	+		ABI39_RS21905	0.86	-0.7
2,084,594	+				-0.4
2,084,633	+		ABI39_RS07690	0.11	+1.9
2,084,690	+		ABI39_RS07690	0.19	+0.5
2,084,719	+		ABI39_RS07690	0.24	+1.5
2,084,849	-		ABI39_RS07690	0.44	+1.1
2,084,856	+		ABI39_RS07690	0.45	-0.0
2,084,856	+		ABI39_RS07690	0.45	-0.9
2,084,857	-		ABI39_RS07690	0.45	-0.4
2,084,857	-		ABI39_RS07690	0.45	+1.2
2,084,878	-		ABI39_RS07690	0.48	+2.1
2,084,987	-		ABI39_RS07690	0.65	-0.6
2,085,211	+				+0.3
2,085,255	+				+0.9
2,085,263	+				-0.4
2,085,264	-				+0.5
2,085,264	-				-0.3
2,085,335	-				+1.4
2,085,341	-				-0.8
2,085,385	+				+1.6
2,085,386	-				+1.0
2,085,410	+				-1.7
2,085,487	+				-0.0
2,085,608	+				+0.1
2,085,696	-				-2.3
2,085,748	+				+1.3
2,085,755	-				+0.3
2,086,030	-		ABI39_RS07695	0.40	-0.1
2,086,088	+		ABI39_RS07695	0.58	+1.4
2,086,089	-		ABI39_RS07695	0.59	-1.0
2,086,186	+				-1.3