Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07245

Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; filtered 2.5 mg/ml (C)
1,989,354	+		ABI39_RS07235	0.49	+0.1
1,989,355	-		ABI39_RS07235	0.49	-1.0
1,989,356	+		ABI39_RS07235	0.49	-1.3
1,989,357	-		ABI39_RS07235	0.49	+0.1
1,989,419	-		ABI39_RS07235	0.64	-0.1
1,989,420	+		ABI39_RS07235	0.64	+1.0
1,989,512	+		ABI39_RS07235	0.85	-1.2
1,989,513	-		ABI39_RS07235	0.85	-0.7
1,989,543	-				-1.2
1,989,576	-				-0.5
1,989,791	+		ABI39_RS07240	0.21	+0.8
1,989,831	+		ABI39_RS07240	0.29	+0.2
1,989,957	+		ABI39_RS07240	0.52	+0.6
1,989,963	-		ABI39_RS07240	0.53	-0.8
1,989,971	+		ABI39_RS07240	0.55	+0.1
1,990,017	+		ABI39_RS07240	0.63	+0.5
1,990,022	+		ABI39_RS07240	0.64	+0.1
1,990,040	+		ABI39_RS07240	0.67	+0.2
1,990,041	-		ABI39_RS07240	0.67	+0.2
1,990,044	+		ABI39_RS07240	0.68	+0.7
1,990,045	-		ABI39_RS07240	0.68	+0.1
1,990,046	+		ABI39_RS07240	0.68	+0.3
1,990,047	-		ABI39_RS07240	0.69	-0.7
1,990,048	+		ABI39_RS07240	0.69	-3.5
1,990,048	+		ABI39_RS07240	0.69	-0.6
1,990,049	-		ABI39_RS07240	0.69	-0.1
1,990,052	+		ABI39_RS07240	0.69	+1.7
1,990,053	-		ABI39_RS07240	0.70	+2.3
1,990,053	-		ABI39_RS07240	0.70	+1.6
1,990,053	-		ABI39_RS07240	0.70	+0.3
1,990,136	+		ABI39_RS07240	0.85	-0.2
1,990,228	+				-1.0
1,990,233	-				-0.3
1,990,305	-		ABI39_RS07245	0.14	+1.4
1,990,332	-		ABI39_RS07245	0.18	+1.1
1,990,338	+		ABI39_RS07245	0.19	-0.2
1,990,348	+		ABI39_RS07245	0.21	-0.5
1,990,348	+		ABI39_RS07245	0.21	+0.6
1,990,348	+		ABI39_RS07245	0.21	+1.3
1,990,380	+		ABI39_RS07245	0.27	-1.6
1,990,380	+		ABI39_RS07245	0.27	+0.8
1,990,380	+		ABI39_RS07245	0.27	-0.0
1,990,381	-		ABI39_RS07245	0.27	-0.6
1,990,393	+		ABI39_RS07245	0.29	-0.4
1,990,399	-		ABI39_RS07245	0.30	+1.6
1,990,402	-		ABI39_RS07245	0.31	+1.0
1,990,405	+		ABI39_RS07245	0.31	+0.4
1,990,406	-		ABI39_RS07245	0.31	+0.2
1,990,425	-		ABI39_RS07245	0.35	-0.3
1,990,431	+		ABI39_RS07245	0.36	+0.4
1,990,485	+		ABI39_RS07245	0.45	-0.3
1,990,488	-		ABI39_RS07245	0.46	-0.4
1,990,502	+		ABI39_RS07245	0.48	+0.2
1,990,528	-		ABI39_RS07245	0.53	+0.9
1,990,548	+		ABI39_RS07245	0.56	-0.0
1,990,550	+		ABI39_RS07245	0.56	-1.0
1,990,551	-		ABI39_RS07245	0.57	+0.3
1,990,561	-		ABI39_RS07245	0.58	+0.3
1,990,596	+		ABI39_RS07245	0.64	-0.2
1,990,606	-		ABI39_RS07245	0.66	-2.9
1,990,608	-		ABI39_RS07245	0.66	-1.1
1,990,631	+		ABI39_RS07245	0.71	-1.5
1,990,634	-		ABI39_RS07245	0.71	-0.8
1,990,720	+		ABI39_RS07245	0.86	+0.4
1,990,778	-				-0.2
1,990,945	-				-0.1
1,990,946	+				-0.1
1,990,969	-				+2.4
1,990,988	-				+0.6
1,991,013	-				-0.2
1,991,106	+				-0.7
1,991,107	-				+0.7
1,991,108	+				-0.8
1,991,108	+				+0.3
1,991,155	+				-0.5
1,991,156	-				+0.1
1,991,163	+		ABI39_RS07250	0.10	+1.6
1,991,164	-		ABI39_RS07250	0.10	+0.4
1,991,251	-		ABI39_RS07250	0.18	+0.3
1,991,251	-		ABI39_RS07250	0.18	+0.0
1,991,251	-		ABI39_RS07250	0.18	-0.6
1,991,254	+		ABI39_RS07250	0.18	+0.2
1,991,254	+		ABI39_RS07250	0.18	-0.8
1,991,305	-		ABI39_RS07250	0.23	-0.2
1,991,517	+		ABI39_RS07250	0.41	+0.5
1,991,542	+		ABI39_RS07250	0.43	+0.5
1,991,543	-		ABI39_RS07250	0.44	+1.2
1,991,715	+		ABI39_RS07250	0.59	+0.7
1,991,716	-		ABI39_RS07250	0.59	-1.4
1,991,738	-		ABI39_RS07250	0.61	+0.1