Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00160 and ABI39_RS00165 are separated by 375 nucleotides ABI39_RS00165 and ABI39_RS00170 are separated by 626 nucleotides
ABI39_RS00160: ABI39_RS00160 - glycosyl hydrolase 43 family protein, at 40,194 to 41,777
_RS00160
ABI39_RS00165: ABI39_RS00165 - response regulator, at 42,153 to 46,205
_RS00165
ABI39_RS00170: ABI39_RS00170 - RagB/SusD family nutrient uptake outer membrane protein, at 46,832 to 48,766
_RS00170
Position (kb) 42
43
44
45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.401 kb on + strand, within ABI39_RS00160 at 41.401 kb on + strand, within ABI39_RS00160 at 41.405 kb on + strand, within ABI39_RS00160 at 41.408 kb on - strand, within ABI39_RS00160 at 41.442 kb on + strand, within ABI39_RS00160 at 41.446 kb on + strand, within ABI39_RS00160 at 41.447 kb on - strand, within ABI39_RS00160 at 41.497 kb on + strand, within ABI39_RS00160 at 41.497 kb on + strand, within ABI39_RS00160 at 41.500 kb on - strand, within ABI39_RS00160 at 41.621 kb on + strand at 41.621 kb on + strand at 41.641 kb on + strand at 41.645 kb on - strand at 41.754 kb on - strand at 41.756 kb on + strand at 41.760 kb on - strand at 42.019 kb on + strand at 42.019 kb on + strand at 42.019 kb on + strand at 42.023 kb on + strand at 42.099 kb on - strand at 42.101 kb on - strand at 42.101 kb on - strand at 42.145 kb on - strand at 42.147 kb on + strand at 42.148 kb on - strand at 42.150 kb on - strand at 42.271 kb on - strand at 42.348 kb on + strand at 42.391 kb on - strand at 42.441 kb on + strand at 42.441 kb on + strand at 42.441 kb on + strand at 42.441 kb on + strand at 42.442 kb on - strand at 42.452 kb on - strand at 42.452 kb on - strand at 42.548 kb on + strand at 42.563 kb on - strand, within ABI39_RS00165 at 42.714 kb on - strand, within ABI39_RS00165 at 42.738 kb on - strand, within ABI39_RS00165 at 42.789 kb on + strand, within ABI39_RS00165 at 43.020 kb on - strand, within ABI39_RS00165 at 43.020 kb on - strand, within ABI39_RS00165 at 43.024 kb on - strand, within ABI39_RS00165 at 43.147 kb on + strand, within ABI39_RS00165 at 43.148 kb on - strand, within ABI39_RS00165 at 43.172 kb on + strand, within ABI39_RS00165 at 43.173 kb on - strand, within ABI39_RS00165 at 43.223 kb on - strand, within ABI39_RS00165 at 43.255 kb on - strand, within ABI39_RS00165 at 43.291 kb on - strand, within ABI39_RS00165 at 43.342 kb on - strand, within ABI39_RS00165 at 43.426 kb on - strand, within ABI39_RS00165 at 43.667 kb on - strand, within ABI39_RS00165 at 43.673 kb on + strand, within ABI39_RS00165 at 43.676 kb on - strand, within ABI39_RS00165 at 43.741 kb on - strand, within ABI39_RS00165 at 43.861 kb on - strand, within ABI39_RS00165 at 43.861 kb on - strand, within ABI39_RS00165 at 43.957 kb on - strand, within ABI39_RS00165 at 43.957 kb on - strand, within ABI39_RS00165 at 44.173 kb on + strand, within ABI39_RS00165 at 44.284 kb on + strand, within ABI39_RS00165 at 44.289 kb on - strand, within ABI39_RS00165 at 44.294 kb on - strand, within ABI39_RS00165 at 44.476 kb on - strand, within ABI39_RS00165 at 44.562 kb on - strand, within ABI39_RS00165 at 44.624 kb on - strand, within ABI39_RS00165 at 44.624 kb on - strand, within ABI39_RS00165 at 44.703 kb on + strand, within ABI39_RS00165 at 44.764 kb on + strand, within ABI39_RS00165 at 44.876 kb on + strand, within ABI39_RS00165 at 45.132 kb on + strand, within ABI39_RS00165 at 45.270 kb on - strand, within ABI39_RS00165 at 45.465 kb on - strand, within ABI39_RS00165 at 45.465 kb on - strand, within ABI39_RS00165 at 45.562 kb on + strand, within ABI39_RS00165 at 45.563 kb on - strand, within ABI39_RS00165 at 45.715 kb on - strand, within ABI39_RS00165 at 45.742 kb on + strand, within ABI39_RS00165 at 45.799 kb on - strand, within ABI39_RS00165 at 45.830 kb on - strand at 45.830 kb on - strand at 45.943 kb on + strand at 46.157 kb on - strand at 46.158 kb on + strand at 46.158 kb on + strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.320 kb on - strand at 46.320 kb on - strand at 46.322 kb on - strand at 46.541 kb on + strand at 46.568 kb on + strand at 46.657 kb on + strand at 47.172 kb on + strand, within ABI39_RS00170 at 47.172 kb on + strand, within ABI39_RS00170 at 47.172 kb on + strand, within ABI39_RS00170
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; filtered 2.5 mg/ml (C) remove 41,401 + ABI39_RS00160 0.76 -0.3 41,401 + ABI39_RS00160 0.76 +1.3 41,405 + ABI39_RS00160 0.76 +2.4 41,408 - ABI39_RS00160 0.77 -1.1 41,442 + ABI39_RS00160 0.79 +0.4 41,446 + ABI39_RS00160 0.79 -0.1 41,447 - ABI39_RS00160 0.79 -1.0 41,497 + ABI39_RS00160 0.82 +0.6 41,497 + ABI39_RS00160 0.82 -1.3 41,500 - ABI39_RS00160 0.82 -0.4 41,621 + -0.6 41,621 + +0.4 41,641 + -0.6 41,645 - -1.3 41,754 - -1.0 41,756 + -0.2 41,760 - +1.4 42,019 + +0.1 42,019 + +1.5 42,019 + +1.0 42,023 + -0.2 42,099 - +0.5 42,101 - -2.1 42,101 - -0.5 42,145 - -0.2 42,147 + +0.1 42,148 - -0.1 42,150 - +0.2 42,271 - +0.5 42,348 + -1.0 42,391 - -0.9 42,441 + +0.6 42,441 + +0.4 42,441 + +0.3 42,441 + -1.8 42,442 - -0.2 42,452 - +1.5 42,452 - -2.3 42,548 + +0.5 42,563 - ABI39_RS00165 0.10 -1.6 42,714 - ABI39_RS00165 0.14 -0.4 42,738 - ABI39_RS00165 0.14 +2.2 42,789 + ABI39_RS00165 0.16 -0.3 43,020 - ABI39_RS00165 0.21 -1.6 43,020 - ABI39_RS00165 0.21 -0.1 43,024 - ABI39_RS00165 0.21 -0.6 43,147 + ABI39_RS00165 0.25 -1.1 43,148 - ABI39_RS00165 0.25 +0.2 43,172 + ABI39_RS00165 0.25 +0.4 43,173 - ABI39_RS00165 0.25 -0.2 43,223 - ABI39_RS00165 0.26 +0.8 43,255 - ABI39_RS00165 0.27 -0.3 43,291 - ABI39_RS00165 0.28 -0.9 43,342 - ABI39_RS00165 0.29 -0.4 43,426 - ABI39_RS00165 0.31 -1.6 43,667 - ABI39_RS00165 0.37 +2.0 43,673 + ABI39_RS00165 0.38 +0.3 43,676 - ABI39_RS00165 0.38 -0.6 43,741 - ABI39_RS00165 0.39 -0.1 43,861 - ABI39_RS00165 0.42 -0.4 43,861 - ABI39_RS00165 0.42 +0.8 43,957 - ABI39_RS00165 0.45 -0.7 43,957 - ABI39_RS00165 0.45 +0.2 44,173 + ABI39_RS00165 0.50 -0.2 44,284 + ABI39_RS00165 0.53 -0.1 44,289 - ABI39_RS00165 0.53 +0.2 44,294 - ABI39_RS00165 0.53 -1.2 44,476 - ABI39_RS00165 0.57 -1.6 44,562 - ABI39_RS00165 0.59 +0.5 44,624 - ABI39_RS00165 0.61 -2.0 44,624 - ABI39_RS00165 0.61 +0.1 44,703 + ABI39_RS00165 0.63 +1.9 44,764 + ABI39_RS00165 0.64 +0.2 44,876 + ABI39_RS00165 0.67 +0.2 45,132 + ABI39_RS00165 0.74 -0.7 45,270 - ABI39_RS00165 0.77 -0.6 45,465 - ABI39_RS00165 0.82 +0.2 45,465 - ABI39_RS00165 0.82 -0.7 45,562 + ABI39_RS00165 0.84 -1.0 45,563 - ABI39_RS00165 0.84 +0.3 45,715 - ABI39_RS00165 0.88 +0.3 45,742 + ABI39_RS00165 0.89 -1.0 45,799 - ABI39_RS00165 0.90 +1.9 45,830 - +0.1 45,830 - -1.1 45,943 + -2.0 46,157 - -0.4 46,158 + -0.8 46,158 + -0.8 46,316 - -1.4 46,316 - +0.7 46,316 - -1.2 46,316 - +0.2 46,320 - +0.4 46,320 - -1.6 46,322 - +0.3 46,541 + +0.9 46,568 + +0.2 46,657 + -0.2 47,172 + ABI39_RS00170 0.18 -0.7 47,172 + ABI39_RS00170 0.18 -0.7 47,172 + ABI39_RS00170 0.18 -0.3
Or see this region's nucleotide sequence