Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10220

Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; filtered 2.5 mg/ml (C)
2,726,340	+		ABI39_RS10215	0.32	-5.7
2,726,476	-		ABI39_RS10215	0.44	-4.8
2,726,529	+		ABI39_RS10215	0.49	-3.4
2,726,530	-		ABI39_RS10215	0.49	-3.3
2,726,530	-		ABI39_RS10215	0.49	-3.6
2,726,551	-		ABI39_RS10215	0.51	-5.0
2,726,555	+		ABI39_RS10215	0.52	-3.2
2,726,555	+		ABI39_RS10215	0.52	-5.4
2,726,647	+		ABI39_RS10215	0.60	-3.2
2,726,648	-		ABI39_RS10215	0.61	-3.2
2,726,951	+		ABI39_RS10215	0.89	-4.5
2,726,979	+				-3.1
2,727,013	+				-4.0
2,727,014	-				-3.3
2,727,072	+				-0.0
2,727,214	-				-1.3
2,727,356	+		ABI39_RS10220	0.14	-1.4
2,727,357	-		ABI39_RS10220	0.14	+0.2
2,727,394	+		ABI39_RS10220	0.17	-0.3
2,727,395	-		ABI39_RS10220	0.17	-0.4
2,727,401	+		ABI39_RS10220	0.18	-0.3
2,727,423	-		ABI39_RS10220	0.20	-0.8
2,727,464	+		ABI39_RS10220	0.23	-2.0
2,727,464	+		ABI39_RS10220	0.23	-0.2
2,727,467	-		ABI39_RS10220	0.23	+0.6
2,727,467	-		ABI39_RS10220	0.23	+0.0
2,727,518	+		ABI39_RS10220	0.28	+1.4
2,727,549	-		ABI39_RS10220	0.31	-1.6
2,727,637	+		ABI39_RS10220	0.38	-0.0
2,727,681	-		ABI39_RS10220	0.42	+0.0
2,727,745	-		ABI39_RS10220	0.48	-2.0
2,727,745	-		ABI39_RS10220	0.48	-0.6
2,727,773	-		ABI39_RS10220	0.50	+0.2
2,727,778	+		ABI39_RS10220	0.51	-0.6
2,727,778	+		ABI39_RS10220	0.51	-0.7
2,727,778	+		ABI39_RS10220	0.51	+0.1
2,727,779	-		ABI39_RS10220	0.51	-0.8
2,727,779	-		ABI39_RS10220	0.51	-0.5
2,727,781	-		ABI39_RS10220	0.51	-0.8
2,727,784	+		ABI39_RS10220	0.51	+1.1
2,727,785	-		ABI39_RS10220	0.51	-0.3
2,727,869	-		ABI39_RS10220	0.59	-0.9
2,728,010	+		ABI39_RS10220	0.71	-0.5
2,728,014	+		ABI39_RS10220	0.71	+0.4
2,728,146	-		ABI39_RS10220	0.83	-0.6
2,728,202	-		ABI39_RS10220	0.88	-1.1
2,728,202	-		ABI39_RS10220	0.88	+0.1
2,728,292	-				+1.4
2,728,316	+				-0.8
2,728,321	-				+0.6
2,728,515	-		ABI39_RS10225	0.21	-0.5
2,728,531	+		ABI39_RS10225	0.24	-0.8
2,728,532	-		ABI39_RS10225	0.25	-2.6
2,728,606	+		ABI39_RS10225	0.40	+0.2
2,728,696	-		ABI39_RS10225	0.58	+0.5
2,728,696	-		ABI39_RS10225	0.58	+0.4
2,728,717	-		ABI39_RS10225	0.63	-0.6
2,728,760	+		ABI39_RS10225	0.72	+1.2
2,728,769	-		ABI39_RS10225	0.73	-0.5
2,728,769	-		ABI39_RS10225	0.73	+0.2
2,728,851	-				-0.7
2,729,011	-				-0.1
2,729,011	-				-0.0
2,729,037	+				-0.2
2,729,061	+				+0.3
2,729,061	+				+0.3
2,729,062	-				+0.1
2,729,062	-				-0.4
2,729,071	+				-0.7
2,729,072	-				-0.4
2,729,080	-				+2.2
2,729,090	-				-2.8
2,729,308	+		ABI39_RS10230	0.34	+2.0
2,729,308	+		ABI39_RS10230	0.34	+1.1
2,729,312	-		ABI39_RS10230	0.35	+0.7