Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06570

Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; filtered 2.5 mg/ml (C)
1,816,736	-		ABI39_RS06565	0.46	-1.1
1,816,949	+		ABI39_RS06565	0.58	-0.6
1,816,950	-		ABI39_RS06565	0.59	-1.6
1,816,950	-		ABI39_RS06565	0.59	-0.4
1,816,994	-		ABI39_RS06565	0.61	-2.0
1,817,008	-		ABI39_RS06565	0.62	-0.8
1,817,043	+		ABI39_RS06565	0.64	-1.5
1,817,044	-		ABI39_RS06565	0.64	-1.9
1,817,225	-		ABI39_RS06565	0.74	-0.4
1,817,258	+		ABI39_RS06565	0.76	-1.0
1,817,366	-		ABI39_RS06565	0.82	-0.8
1,817,368	+		ABI39_RS06565	0.82	-0.1
1,817,441	-		ABI39_RS06565	0.86	-0.2
1,817,494	+		ABI39_RS06565	0.89	-1.5
1,817,593	-				-1.2
1,817,600	-				-0.8
1,817,600	-				-1.0
1,817,662	+				-1.9
1,817,701	-				-1.3
1,817,768	+				-0.4
1,817,866	+				-1.5
1,817,867	-				-0.4
1,818,283	+		ABI39_RS06570	0.33	-0.6
1,818,377	+		ABI39_RS06570	0.38	+0.3
1,818,384	+		ABI39_RS06570	0.38	-1.1
1,818,384	+		ABI39_RS06570	0.38	-0.0
1,818,385	-		ABI39_RS06570	0.38	+0.4
1,818,470	+		ABI39_RS06570	0.43	-0.1
1,818,494	-		ABI39_RS06570	0.45	-1.2
1,818,725	-		ABI39_RS06570	0.58	-0.4
1,818,729	-		ABI39_RS06570	0.58	-0.5
1,818,733	+		ABI39_RS06570	0.58	+0.1
1,818,808	+		ABI39_RS06570	0.63	-0.9
1,818,809	-		ABI39_RS06570	0.63	-2.1
1,818,932	-		ABI39_RS06570	0.70	+0.1
1,818,932	-		ABI39_RS06570	0.70	-1.1
1,818,932	-		ABI39_RS06570	0.70	-0.6
1,818,970	+		ABI39_RS06570	0.72	-1.8
1,818,971	-		ABI39_RS06570	0.72	-0.2
1,818,975	-		ABI39_RS06570	0.72	-2.4
1,818,975	-		ABI39_RS06570	0.72	-2.5
1,819,025	-		ABI39_RS06570	0.75	-0.8
1,819,051	-		ABI39_RS06570	0.76	-0.9
1,819,128	+		ABI39_RS06570	0.81	-1.2
1,819,140	-		ABI39_RS06570	0.82	-1.4
1,819,141	+		ABI39_RS06570	0.82	-0.7
1,819,142	-		ABI39_RS06570	0.82	-1.1
1,819,144	+		ABI39_RS06570	0.82	-1.1
1,819,214	-		ABI39_RS06570	0.86	+0.3
1,819,218	+		ABI39_RS06570	0.86	-1.1
1,819,282	+		ABI39_RS06570	0.90	-0.3
1,819,309	+				-0.4
1,819,310	-				-0.8
1,819,423	-				-0.2
1,819,451	+				-0.5
1,819,485	-				-1.1
1,819,576	+				-1.6
1,819,609	+				-0.8
1,819,609	+				-1.3
1,819,628	+				-0.7
1,819,636	+				-0.9
1,819,690	+				-0.4
1,819,691	-				-1.5
1,819,773	+				-1.9
1,819,779	-				-0.4
1,819,803	-				-0.6
1,819,806	+		ABI39_RS06575	0.10	-1.4
1,819,807	-		ABI39_RS06575	0.10	-0.7
1,819,910	+		ABI39_RS06575	0.13	-1.1
1,820,185	+		ABI39_RS06575	0.22	+0.2
1,820,198	+		ABI39_RS06575	0.22	+0.8
1,820,212	-		ABI39_RS06575	0.23	-0.2