Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01185 and ABI39_RS01190 are separated by 80 nucleotides ABI39_RS01190 and ABI39_RS01195 are separated by 132 nucleotides ABI39_RS01195 and ABI39_RS01200 are separated by 78 nucleotides
ABI39_RS01185: ABI39_RS01185 - zinc-binding alcohol dehydrogenase family protein, at 372,637 to 373,656
_RS01185
ABI39_RS01190: ABI39_RS01190 - NAAT family transporter, at 373,737 to 374,381
_RS01190
ABI39_RS01195: ABI39_RS01195 - 5S ribosomal RNA, at 374,514 to 374,624
_RS01195
ABI39_RS01200: ABI39_RS01200 - 23S ribosomal RNA, at 374,703 to 377,591
_RS01200
Position (kb) 373
374
375 Strain fitness (log2 ratio) -1
0
1 at 372.826 kb on - strand, within ABI39_RS01185 at 372.852 kb on - strand, within ABI39_RS01185 at 372.896 kb on - strand, within ABI39_RS01185 at 373.079 kb on + strand, within ABI39_RS01185 at 373.129 kb on - strand, within ABI39_RS01185 at 373.170 kb on - strand, within ABI39_RS01185 at 373.404 kb on - strand, within ABI39_RS01185 at 373.410 kb on - strand, within ABI39_RS01185 at 373.410 kb on - strand, within ABI39_RS01185 at 373.410 kb on - strand, within ABI39_RS01185 at 373.569 kb on - strand at 373.635 kb on + strand at 373.641 kb on - strand at 373.658 kb on - strand at 373.672 kb on + strand at 373.698 kb on - strand at 373.701 kb on + strand at 373.707 kb on + strand at 373.768 kb on - strand at 373.806 kb on + strand, within ABI39_RS01190 at 373.820 kb on + strand, within ABI39_RS01190 at 373.903 kb on + strand, within ABI39_RS01190 at 373.904 kb on - strand, within ABI39_RS01190 at 373.915 kb on + strand, within ABI39_RS01190 at 373.953 kb on - strand, within ABI39_RS01190 at 374.046 kb on - strand, within ABI39_RS01190 at 374.087 kb on + strand, within ABI39_RS01190 at 374.111 kb on + strand, within ABI39_RS01190 at 374.256 kb on - strand, within ABI39_RS01190 at 374.291 kb on + strand, within ABI39_RS01190 at 374.345 kb on + strand at 374.355 kb on + strand at 374.355 kb on + strand at 374.368 kb on - strand at 374.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; filtered 2.5 mg/ml (C) remove 372,826 - ABI39_RS01185 0.19 +1.0 372,852 - ABI39_RS01185 0.21 -1.6 372,896 - ABI39_RS01185 0.25 -0.9 373,079 + ABI39_RS01185 0.43 -0.1 373,129 - ABI39_RS01185 0.48 -0.3 373,170 - ABI39_RS01185 0.52 -1.0 373,404 - ABI39_RS01185 0.75 +1.1 373,410 - ABI39_RS01185 0.76 +0.4 373,410 - ABI39_RS01185 0.76 -0.3 373,410 - ABI39_RS01185 0.76 +0.5 373,569 - -1.7 373,635 + -1.0 373,641 - +1.1 373,658 - +0.3 373,672 + -0.6 373,698 - +1.6 373,701 + +0.6 373,707 + -0.4 373,768 - -0.6 373,806 + ABI39_RS01190 0.11 +0.2 373,820 + ABI39_RS01190 0.13 -0.2 373,903 + ABI39_RS01190 0.26 -0.3 373,904 - ABI39_RS01190 0.26 +0.9 373,915 + ABI39_RS01190 0.28 -1.7 373,953 - ABI39_RS01190 0.33 -1.0 374,046 - ABI39_RS01190 0.48 +0.9 374,087 + ABI39_RS01190 0.54 +1.5 374,111 + ABI39_RS01190 0.58 +0.2 374,256 - ABI39_RS01190 0.80 +0.1 374,291 + ABI39_RS01190 0.86 +0.8 374,345 + +0.0 374,355 + +0.1 374,355 + +0.7 374,368 - +0.6 374,391 - +0.0
Or see this region's nucleotide sequence