Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02155 and ABI39_RS22960 are separated by 190 nucleotides ABI39_RS22960 and ABI39_RS02160 are separated by 128 nucleotides
ABI39_RS02155: ABI39_RS02155 - DUF1566 domain-containing protein, at 630,108 to 631,658
_RS02155
ABI39_RS22960: ABI39_RS22960 - hypothetical protein, at 631,849 to 631,995
_RS22960
ABI39_RS02160: ABI39_RS02160 - RagB/SusD family nutrient uptake outer membrane protein, at 632,124 to 634,139
_RS02160
Position (kb) 631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 630.903 kb on + strand, within ABI39_RS02155 at 630.904 kb on - strand, within ABI39_RS02155 at 631.023 kb on + strand, within ABI39_RS02155 at 631.143 kb on - strand, within ABI39_RS02155 at 631.144 kb on + strand, within ABI39_RS02155 at 631.145 kb on - strand, within ABI39_RS02155 at 631.401 kb on + strand, within ABI39_RS02155 at 631.656 kb on + strand at 631.657 kb on - strand at 631.673 kb on + strand at 631.824 kb on - strand at 631.890 kb on + strand, within ABI39_RS22960 at 632.002 kb on + strand at 632.002 kb on + strand at 632.002 kb on + strand at 632.003 kb on - strand at 632.004 kb on + strand at 632.061 kb on - strand at 632.061 kb on - strand at 632.176 kb on + strand at 632.177 kb on + strand at 632.214 kb on - strand at 632.217 kb on + strand at 632.218 kb on - strand at 632.218 kb on - strand at 632.249 kb on - strand at 632.265 kb on - strand at 632.266 kb on + strand at 632.309 kb on - strand at 632.321 kb on - strand at 632.804 kb on + strand, within ABI39_RS02160 at 632.809 kb on + strand, within ABI39_RS02160 at 632.810 kb on - strand, within ABI39_RS02160 at 632.814 kb on - strand, within ABI39_RS02160
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 630,903 + ABI39_RS02155 0.51 +0.8 630,904 - ABI39_RS02155 0.51 -0.2 631,023 + ABI39_RS02155 0.59 +0.1 631,143 - ABI39_RS02155 0.67 +0.4 631,144 + ABI39_RS02155 0.67 +0.9 631,145 - ABI39_RS02155 0.67 +0.7 631,401 + ABI39_RS02155 0.83 -1.2 631,656 + +0.8 631,657 - -0.4 631,673 + -0.1 631,824 - +0.2 631,890 + ABI39_RS22960 0.28 -2.2 632,002 + +0.4 632,002 + -0.1 632,002 + -0.8 632,003 - +0.2 632,004 + -1.9 632,061 - +1.2 632,061 - -0.2 632,176 + +0.1 632,177 + +0.4 632,214 - +0.8 632,217 + -0.5 632,218 - -0.5 632,218 - -0.4 632,249 - -0.7 632,265 - +1.1 632,266 + +0.9 632,309 - +1.2 632,321 - -1.6 632,804 + ABI39_RS02160 0.34 -1.5 632,809 + ABI39_RS02160 0.34 -1.0 632,810 - ABI39_RS02160 0.34 +0.4 632,814 - ABI39_RS02160 0.34 +1.1
Or see this region's nucleotide sequence