Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS20960 and ABI39_RS20965 are separated by 125 nucleotides ABI39_RS20965 and ABI39_RS20970 are separated by 211 nucleotides ABI39_RS20970 and ABI39_RS20975 are separated by 77 nucleotides ABI39_RS20975 and ABI39_RS20980 are separated by 2 nucleotides
ABI39_RS20960: ABI39_RS20960 - PCMD domain-containing protein, at 5,160,091 to 5,161,050
_RS20960
ABI39_RS20965: ABI39_RS20965 - SPOR domain-containing protein, at 5,161,176 to 5,161,673
_RS20965
ABI39_RS20970: ABI39_RS20970 - YtxH domain-containing protein, at 5,161,885 to 5,162,082
_RS20970
ABI39_RS20975: ABI39_RS20975 - phage holin family protein, at 5,162,160 to 5,162,516
_RS20975
ABI39_RS20980: ABI39_RS20980 - hypothetical protein, at 5,162,519 to 5,162,785
_RS20980
Position (kb) 5161
5162 Strain fitness (log2 ratio) -2
-1
0
1 at 5160.258 kb on + strand, within ABI39_RS20960 at 5160.335 kb on + strand, within ABI39_RS20960 at 5160.350 kb on - strand, within ABI39_RS20960 at 5160.387 kb on + strand, within ABI39_RS20960 at 5160.387 kb on + strand, within ABI39_RS20960 at 5160.388 kb on - strand, within ABI39_RS20960 at 5160.408 kb on + strand, within ABI39_RS20960 at 5160.432 kb on + strand, within ABI39_RS20960 at 5160.539 kb on - strand, within ABI39_RS20960 at 5160.539 kb on - strand, within ABI39_RS20960 at 5160.546 kb on - strand, within ABI39_RS20960 at 5160.627 kb on + strand, within ABI39_RS20960 at 5160.640 kb on - strand, within ABI39_RS20960 at 5160.676 kb on - strand, within ABI39_RS20960 at 5160.777 kb on + strand, within ABI39_RS20960 at 5160.807 kb on + strand, within ABI39_RS20960 at 5160.870 kb on + strand, within ABI39_RS20960 at 5160.870 kb on + strand, within ABI39_RS20960 at 5160.871 kb on - strand, within ABI39_RS20960 at 5160.896 kb on + strand, within ABI39_RS20960 at 5160.952 kb on - strand, within ABI39_RS20960 at 5160.965 kb on - strand at 5161.006 kb on + strand at 5161.044 kb on - strand at 5161.044 kb on - strand at 5161.088 kb on + strand at 5161.177 kb on + strand at 5161.181 kb on - strand at 5161.181 kb on - strand at 5161.181 kb on - strand at 5161.187 kb on + strand at 5161.187 kb on + strand at 5161.189 kb on + strand at 5161.189 kb on + strand at 5161.191 kb on + strand at 5161.407 kb on + strand, within ABI39_RS20965 at 5161.407 kb on + strand, within ABI39_RS20965 at 5161.500 kb on + strand, within ABI39_RS20965 at 5161.719 kb on - strand at 5161.721 kb on - strand at 5161.904 kb on + strand at 5161.948 kb on - strand, within ABI39_RS20970 at 5162.004 kb on - strand, within ABI39_RS20970 at 5162.102 kb on - strand at 5162.187 kb on - strand at 5162.187 kb on - strand at 5162.221 kb on - strand, within ABI39_RS20975 at 5162.318 kb on - strand, within ABI39_RS20975 at 5162.358 kb on + strand, within ABI39_RS20975 at 5162.530 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 5,160,258 + ABI39_RS20960 0.17 -0.3 5,160,335 + ABI39_RS20960 0.25 +0.4 5,160,350 - ABI39_RS20960 0.27 +0.1 5,160,387 + ABI39_RS20960 0.31 -1.3 5,160,387 + ABI39_RS20960 0.31 +0.4 5,160,388 - ABI39_RS20960 0.31 -0.2 5,160,408 + ABI39_RS20960 0.33 -1.7 5,160,432 + ABI39_RS20960 0.36 +0.6 5,160,539 - ABI39_RS20960 0.47 -1.1 5,160,539 - ABI39_RS20960 0.47 +1.0 5,160,546 - ABI39_RS20960 0.47 -1.0 5,160,627 + ABI39_RS20960 0.56 -0.0 5,160,640 - ABI39_RS20960 0.57 +1.5 5,160,676 - ABI39_RS20960 0.61 -0.3 5,160,777 + ABI39_RS20960 0.71 -0.1 5,160,807 + ABI39_RS20960 0.75 +0.8 5,160,870 + ABI39_RS20960 0.81 -1.4 5,160,870 + ABI39_RS20960 0.81 -0.2 5,160,871 - ABI39_RS20960 0.81 +0.0 5,160,896 + ABI39_RS20960 0.84 -0.8 5,160,952 - ABI39_RS20960 0.90 +0.9 5,160,965 - +0.4 5,161,006 + +0.3 5,161,044 - -0.5 5,161,044 - +1.5 5,161,088 + -0.4 5,161,177 + -1.1 5,161,181 - -0.8 5,161,181 - +0.3 5,161,181 - -0.4 5,161,187 + +0.0 5,161,187 + -0.2 5,161,189 + -1.7 5,161,189 + -1.8 5,161,191 + -0.3 5,161,407 + ABI39_RS20965 0.46 -2.0 5,161,407 + ABI39_RS20965 0.46 -1.4 5,161,500 + ABI39_RS20965 0.65 -0.1 5,161,719 - +1.3 5,161,721 - -2.5 5,161,904 + -0.4 5,161,948 - ABI39_RS20970 0.32 +0.8 5,162,004 - ABI39_RS20970 0.60 -0.8 5,162,102 - -0.0 5,162,187 - +1.0 5,162,187 - -0.1 5,162,221 - ABI39_RS20975 0.17 -0.7 5,162,318 - ABI39_RS20975 0.44 +0.9 5,162,358 + ABI39_RS20975 0.55 +1.5 5,162,530 + -0.1
Or see this region's nucleotide sequence