Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20010

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
4,941,343	+		ABI39_RS20005	0.19	-0.1
4,941,344	-		ABI39_RS20005	0.19	+1.4
4,941,379	+		ABI39_RS20005	0.22	-0.5
4,941,380	-		ABI39_RS20005	0.23	-0.3
4,941,409	-		ABI39_RS20005	0.26	+0.4
4,941,429	+		ABI39_RS20005	0.28	+0.7
4,941,429	+		ABI39_RS20005	0.28	+0.1
4,941,768	+		ABI39_RS20005	0.62	-0.2
4,941,776	-		ABI39_RS20005	0.63	+0.3
4,941,791	+		ABI39_RS20005	0.65	+0.2
4,941,869	-		ABI39_RS20005	0.73	+0.5
4,942,098	+				+1.0
4,942,205	-				+0.4
4,942,208	+				-0.7
4,942,270	-				+0.2
4,942,413	-				-1.4
4,942,418	-				-0.3
4,942,467	-				+0.6
4,942,493	+		ABI39_RS20010	0.10	+0.1
4,942,493	+		ABI39_RS20010	0.10	+0.1
4,942,606	-		ABI39_RS20010	0.17	+0.6
4,942,608	+		ABI39_RS20010	0.17	+0.2
4,942,610	+		ABI39_RS20010	0.17	+0.2
4,942,611	-		ABI39_RS20010	0.17	-0.3
4,942,656	-		ABI39_RS20010	0.20	+0.4
4,942,866	+		ABI39_RS20010	0.33	+1.2
4,943,005	+		ABI39_RS20010	0.41	+0.2
4,943,127	-		ABI39_RS20010	0.48	+1.6
4,943,346	+		ABI39_RS20010	0.62	+1.9
4,943,397	+		ABI39_RS20010	0.65	+1.0
4,943,398	-		ABI39_RS20010	0.65	+0.2
4,943,472	-		ABI39_RS20010	0.69	+0.7
4,943,493	+		ABI39_RS20010	0.70	-0.2
4,943,495	+		ABI39_RS20010	0.71	+1.2
4,943,496	-		ABI39_RS20010	0.71	-0.7
4,943,507	+		ABI39_RS20010	0.71	+0.4
4,943,508	-		ABI39_RS20010	0.71	-0.4
4,943,510	+		ABI39_RS20010	0.71	+0.7
4,943,523	+		ABI39_RS20010	0.72	+0.4
4,943,528	+		ABI39_RS20010	0.73	+0.6
4,943,529	-		ABI39_RS20010	0.73	-1.0
4,943,534	+		ABI39_RS20010	0.73	+1.1
4,943,543	-		ABI39_RS20010	0.73	+0.6
4,943,709	+		ABI39_RS20010	0.83	+0.6
4,943,751	-		ABI39_RS20010	0.86	-1.1
4,943,751	-		ABI39_RS20010	0.86	+1.1
4,943,897	+				-1.0
4,944,015	+				+0.7
4,944,016	-				-0.7
4,944,017	+				+0.3
4,944,018	-				+0.0
4,944,018	-				-1.9
4,944,020	-				+0.1
4,944,025	-				+0.5
4,944,057	+				+0.2
4,944,057	+				+1.1
4,944,062	+				-0.6
4,944,063	-				+0.9
4,944,063	-				-1.8
4,944,066	+				+0.6
4,944,067	-				-2.6
4,944,067	-				+1.6
4,944,067	-				+0.2
4,944,072	-				+0.7
4,944,090	+				-0.2
4,944,092	+				+0.2
4,944,092	+				+0.8
4,944,112	+				+0.1
4,944,129	+				+3.4
4,944,184	+				+0.3
4,944,187	-				+0.1
4,944,230	-				+1.7
4,944,284	-				+2.2
4,944,323	-				+1.1
4,944,323	-				-0.3
4,944,409	+		ABI39_RS20015	0.12	-0.5
4,944,456	+		ABI39_RS20015	0.16	+1.6
4,944,657	+		ABI39_RS20015	0.30	+0.3
4,944,789	+		ABI39_RS20015	0.40	+1.3