Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17670

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
4,466,157	+				+0.6
4,466,158	-				+0.1
4,466,354	+		ABI39_RS17665	0.12	-0.4
4,466,365	+		ABI39_RS17665	0.13	-1.2
4,466,557	-		ABI39_RS17665	0.40	-0.3
4,466,648	+		ABI39_RS17665	0.53	-0.1
4,466,738	+		ABI39_RS17665	0.66	-0.3
4,466,820	+		ABI39_RS17665	0.77	-1.0
4,466,910	+		ABI39_RS17665	0.90	-0.5
4,466,911	-				-0.3
4,466,986	-				+0.6
4,466,986	-				+1.2
4,466,986	-				+0.1
4,467,050	+				-0.1
4,467,163	+		ABI39_RS17670	0.13	-0.1
4,467,163	+		ABI39_RS17670	0.13	-0.2
4,467,164	-		ABI39_RS17670	0.13	-1.5
4,467,164	-		ABI39_RS17670	0.13	+2.0
4,467,359	+		ABI39_RS17670	0.29	+0.6
4,467,459	-		ABI39_RS17670	0.37	+0.5
4,467,473	+		ABI39_RS17670	0.38	-0.0
4,467,606	-		ABI39_RS17670	0.49	+0.6
4,467,722	-		ABI39_RS17670	0.58	-1.5
4,467,903	+		ABI39_RS17670	0.72	+0.1
4,468,013	+		ABI39_RS17670	0.81	+0.2
4,468,066	+		ABI39_RS17670	0.85	-0.0
4,468,100	+		ABI39_RS17670	0.88	+0.8
4,468,106	+		ABI39_RS17670	0.89	-1.0
4,468,180	-				+0.5
4,468,283	+				+0.0
4,468,283	-				+0.0
4,468,284	-				-2.5
4,468,520	-		ABI39_RS17675	0.20	-0.3
4,468,636	+		ABI39_RS17675	0.29	-0.7
4,468,640	+		ABI39_RS17675	0.30	+0.7
4,468,645	-		ABI39_RS17675	0.30	-1.2
4,468,670	-		ABI39_RS17675	0.32	-1.2
4,468,670	-		ABI39_RS17675	0.32	-0.5
4,468,795	-		ABI39_RS17675	0.42	+0.9
4,468,867	-		ABI39_RS17675	0.47	+1.0
4,468,922	-		ABI39_RS17675	0.51	+1.3
4,468,935	-		ABI39_RS17675	0.52	+1.2
4,468,935	-		ABI39_RS17675	0.52	-0.2
4,469,135	+		ABI39_RS17675	0.68	-0.3
4,469,135	+		ABI39_RS17675	0.68	-0.8
4,469,218	-		ABI39_RS17675	0.74	-0.1
4,469,220	-		ABI39_RS17675	0.74	-0.1