Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15475

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
3,999,511	-		ABI39_RS15470	0.46	-0.1
3,999,618	-		ABI39_RS15470	0.55	-1.2
3,999,831	-		ABI39_RS15470	0.73	+1.2
3,999,988	-		ABI39_RS15470	0.86	+1.6
3,999,988	-		ABI39_RS15470	0.86	-0.7
3,999,990	-		ABI39_RS15470	0.86	+0.5
4,000,010	+		ABI39_RS15470	0.88	+0.2
4,000,155	+				+1.0
4,000,219	+				+1.5
4,000,219	+				+0.2
4,000,219	+				+1.3
4,000,224	-				+0.3
4,000,275	+				-2.4
4,000,313	-				-2.1
4,000,608	-		ABI39_RS15475	0.26	-4.9
4,000,638	+		ABI39_RS15475	0.28	-4.6
4,000,871	-		ABI39_RS15475	0.44	-2.9
4,000,875	+		ABI39_RS15475	0.45	-2.1
4,000,876	-		ABI39_RS15475	0.45	-3.8
4,000,919	+		ABI39_RS15475	0.48	-2.1
4,000,920	-		ABI39_RS15475	0.48	-3.5
4,001,055	-		ABI39_RS15475	0.57	-2.7
4,001,055	-		ABI39_RS15475	0.57	-2.9
4,001,055	-		ABI39_RS15475	0.57	-2.7
4,001,055	-		ABI39_RS15475	0.57	-2.4
4,001,055	-		ABI39_RS15475	0.57	-3.1
4,001,259	+		ABI39_RS15475	0.72	-4.1
4,001,260	-		ABI39_RS15475	0.72	-4.0
4,001,260	-		ABI39_RS15475	0.72	-4.2
4,001,367	+		ABI39_RS15475	0.80	-3.2
4,001,370	-		ABI39_RS15475	0.80	-4.5
4,001,472	+		ABI39_RS15475	0.87	-1.9
4,001,653	-				-2.5
4,001,665	+				-0.5
4,001,665	+				-1.2
4,001,667	+				-3.1
4,001,943	-				-2.3
4,001,954	+				+0.8
4,001,963	-				-3.0
4,002,136	+		ABI39_RS15480	0.11	-3.4
4,002,331	+		ABI39_RS15480	0.25	-2.6
4,002,437	-		ABI39_RS15480	0.32	-1.7