Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12420

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
3,269,300	-		ABI39_RS12410	0.53	+2.2
3,269,300	-		ABI39_RS12410	0.53	+0.3
3,269,321	+		ABI39_RS12410	0.55	+1.4
3,269,447	-		ABI39_RS12410	0.66	+1.8
3,269,737	-				+1.8
3,269,743	-				+2.1
3,269,846	+				+0.2
3,269,955	+		ABI39_RS12415	0.25	-1.5
3,270,025	+		ABI39_RS12415	0.42	-1.4
3,270,025	+		ABI39_RS12415	0.42	-3.4
3,270,085	+		ABI39_RS12415	0.56	-0.4
3,270,091	-		ABI39_RS12415	0.57	-2.4
3,270,218	-		ABI39_RS12415	0.86	-2.2
3,270,237	+				-1.9
3,270,239	+				-2.1
3,270,240	-				-1.1
3,270,260	+				-2.6
3,270,264	+				-1.4
3,270,332	-				-1.9
3,270,355	+				-3.1
3,270,356	-				-3.0
3,270,397	-		ABI39_RS12420	0.10	-1.1
3,270,627	-		ABI39_RS12420	0.35	-1.9
3,270,708	+		ABI39_RS12420	0.44	-2.6
3,270,712	+		ABI39_RS12420	0.44	-0.6
3,270,712	+		ABI39_RS12420	0.44	-2.1
3,270,773	-		ABI39_RS12420	0.51	-2.8
3,270,773	-		ABI39_RS12420	0.51	-3.8
3,270,789	+		ABI39_RS12420	0.53	-3.0
3,270,842	-		ABI39_RS12420	0.58	-2.5
3,270,960	+		ABI39_RS12420	0.71	-1.9
3,270,961	-		ABI39_RS12420	0.71	-2.2
3,271,177	-				-3.6
3,271,177	-				-2.1
3,271,213	-				-2.2
3,271,381	+				-3.0
3,271,382	-				-2.2
3,271,382	-				-1.9
3,271,488	+		ABI39_RS12425	0.15	-2.7
3,271,543	+		ABI39_RS12425	0.18	-3.5
3,271,543	+		ABI39_RS12425	0.18	-3.5
3,271,543	+		ABI39_RS12425	0.18	-1.2
3,271,543	+		ABI39_RS12425	0.18	-3.2
3,271,613	+		ABI39_RS12425	0.23	-2.8
3,271,620	+		ABI39_RS12425	0.23	-1.5
3,271,725	+		ABI39_RS12425	0.30	-1.6
3,271,726	-		ABI39_RS12425	0.30	-3.6
3,271,743	+		ABI39_RS12425	0.31	-2.5
3,271,841	+		ABI39_RS12425	0.38	-2.5
3,271,842	-		ABI39_RS12425	0.38	-2.8
3,271,956	-		ABI39_RS12425	0.45	-3.0
3,272,034	+		ABI39_RS12425	0.50	-1.1
3,272,034	+		ABI39_RS12425	0.50	-1.9
3,272,034	+		ABI39_RS12425	0.50	-3.3
3,272,035	-		ABI39_RS12425	0.50	-3.2
3,272,071	+		ABI39_RS12425	0.52	-0.4
3,272,076	+		ABI39_RS12425	0.53	-3.5
3,272,208	+		ABI39_RS12425	0.61	-3.0