Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11690

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
3,105,469	-		ABI39_RS11685	0.70	-0.2
3,105,496	+		ABI39_RS11685	0.72	-0.2
3,105,500	+		ABI39_RS11685	0.72	-0.1
3,105,501	-		ABI39_RS11685	0.72	-0.9
3,105,798	+				-0.5
3,105,799	-				+0.0
3,105,841	-				-0.4
3,105,906	+				+1.3
3,105,906	+				-1.3
3,105,985	+				+0.3
3,106,078	-				+0.2
3,106,169	+		ABI39_RS22085	0.33	+1.1
3,106,184	+		ABI39_RS22085	0.37	+0.6
3,106,185	-		ABI39_RS22085	0.37	+0.6
3,106,225	+		ABI39_RS22085	0.48	-0.5
3,106,225	+		ABI39_RS22085	0.48	-0.1
3,106,288	+		ABI39_RS22085	0.66	+0.5
3,106,289	-		ABI39_RS22085	0.66	+0.7
3,106,289	-		ABI39_RS22085	0.66	-0.9
3,106,309	-		ABI39_RS22085	0.71	-0.2
3,106,309	-		ABI39_RS22085	0.71	+0.2
3,106,341	-		ABI39_RS22085	0.80	-0.9
3,106,402	+				-0.1
3,106,403	-				-0.2
3,106,467	+		ABI39_RS11690	0.12	-0.9
3,106,483	-		ABI39_RS11690	0.16	-2.2
3,106,488	-		ABI39_RS11690	0.17	-1.7
3,106,535	-		ABI39_RS11690	0.26	+0.3
3,106,537	+		ABI39_RS11690	0.27	-0.9
3,106,538	-		ABI39_RS11690	0.27	+0.2
3,106,567	-		ABI39_RS11690	0.33	-1.8
3,106,567	-		ABI39_RS11690	0.33	+1.2
3,106,858	+				+1.0
3,107,020	-				+0.1
3,107,085	+				-0.6
3,107,110	+				-0.6
3,107,144	+		ABI39_RS11695	0.12	+0.3
3,107,234	-		ABI39_RS11695	0.40	-0.3
3,107,328	-		ABI39_RS11695	0.69	-0.4
3,107,381	+		ABI39_RS11695	0.85	+0.5
3,107,481	-				+1.1
3,107,511	+				-0.9
3,107,512	-				-0.3
3,107,641	+		ABI39_RS11700	0.23	-0.5
3,107,652	-		ABI39_RS11700	0.25	-0.8
3,107,688	+		ABI39_RS11700	0.31	+0.6
3,107,793	+		ABI39_RS11700	0.48	-0.1
3,107,809	-		ABI39_RS11700	0.51	-0.2
3,107,836	-		ABI39_RS11700	0.55	+1.5
3,107,845	+		ABI39_RS11700	0.57	-0.3
3,107,846	-		ABI39_RS11700	0.57	+0.5